AMCG00016833


Basic Information

Item Value
gene id AMCG00016833
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31777412 ~ 31801252 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016833
CCGAGTGCTGGAGAGAAGGAAAGTGTGAGGGCCGACAGTGGGGAGACGAGGCCTCCCCAGCGCCGAGATTCGGAGCCGCGCGAGATCAAGGGCATCCTGAAGAAGCGAGCCGCATCCATCGAGTGTGAGAGCGGGCCAGAGGGCAGCCAGACAGGCAAGGAAGCTGAGGTGGAAAGGGGAAGAAGGGCATCTGAGCCTTCTACAGCCAGCCAGGAGGGTGGCACCGAGAGGGGGGCCCCTTGGCGACGGAATAGAGAACTCAAGATGAGCGATGAAACTACAGAGGAGACGGCCGAGGCGGAAATATTGCTGGGGGAGGACGTGGATACTCGCACCGAAGAGCCTCCCTTGCCCAGGTCTGAGAGCGGCGAGGTGTTCACCTCCGAGCCCAGCACCTCTGGCTCTGCTCCTtggagacagagggacaggaccagctcctccagctccaaAGAGGATGTGGCGGTCAAGTCGGTCCCCACTTCACCCCCTCCTCAGAGCACCCTGGCTCGCTCGCCCTCCCCCGAGGACCAGCACCCTCTGGATAATGATGAGCTTTCTTCTCAGTCTGAGGAAGGAGACTTGTTGGACAGCTCTCTGGATTCCAGCCAGGGATCGTCTTTGAAAGAAAGAATGACACACCTGAAGACTGGGGAAAAAGAGCAGAAGATTGTGTCCAAAAAGAAGTCCGGTGATGTGATCCAAGTGTCCCTTGCTGACCGTTACAATAAACTGCAAGACGCAGAGAATGCCTGGAGGAAGAAGGAAGACACTGAAAATGCCAGTGACTCCTCTGTCTGCACCCAGTGCTGGGAGCCTGTCTATTCCTCTGTCTTTGGCCCCGTGAGTTCTAGACAGCAGTATGTAGTCTGTTATAACCAGAAATCCTCGGCAGAGGTGGAGACCAAGATGAGCTTGGCCGAGAGGATGCGAATTCtgcaggagaaggaggagcagTGGAAGACCAAAGGGCGGGGCGCCTCCAACGACTCCACGCAGTTCACCGTGGCGGGACGCATGGCCAAGAGGGGTTTAGTGTCTCCAGTGTCTGGAAGAGAGGAAGCTCCCATTTTTCACTGCAAAAAATCCACCACAGGAACTCCAGTCAAGCCCTTGGAAGACATTGCCAGTCGAACTGATGTGGAGATGGAGGGGGATAAGAGGTTGGATAAGCTGGAGTCTTTCCTGGACAAGTTGCATAATAAAGGGGTGGGGCACCAAGAGACCTCCATCACCGTCACCCAGGAGACAGTGAAGGAAGTGATGAAGCTGGACGATGATGAGACCTTCTCCAAGTTCTACCGTGGGGTGTCCCCCTCCGCCCTGAGCTCCAGCGGCTCTGTGGAGATCAACGACTTCAGCACTATCTTCGAGTCCCACGCTCCCAAGAAGACCCAGGCCTCCCGCAACCCCCTCCGCACCCTGGCTGCTCGAGATGACATCAGGCAGGAGTACACGGAGCAGCGGCTCAATGTGGCCGTGTTGGAGACCAAGAGGATCCAGGTGGAGAAAATGGCAAAGCATTCCAACTACGCTGATGTTGCGCTGGCTGGCCTGGCCAGCAAGGAGAACTTcaggaaggtgaacctccgcaACGTGAAGTCGACTGAAGTAGTGACCAACAACAGCTCCCTGCCCTTCAACAAGCTAATGCTGAtacaggtcaaagGTCGCCGGCACGTCCAGGTCAGACTGGTGGAGCCCAGCGCCCAGTCTCTGAATAGCGGGGACTGCTTCCTGTTACTCACACCCAAACACTGCTTCCTGTGGAGTGGGGAGTTCGCCAACGTCATTGAGAAAGCCAAGGCCTCAGAACTGGCTTCTTTCATCCAGACCAAACGAGATCTGGGCTGTAAGGCGCCGCACATCACCATCCTGGAGGAGGGAGTGAACATGGAGAGCACCAGAGCCAAGGAATTCTGGAAGCTTCTAGGCGGGAAAGTGGAGTACCGAGgGGCTGGCGATCCTGAGGAAGACGAGGTGTACGAGAGCGCGGTGGTGGAGTCCAACTGTGTGTACAGGCTGGTTGAGGACAGACTTGTCCCTCACGAGGAGGCCTGGGCCACCATCCCCAGCGTGTCCCTGCTCAGCTCCCGAGAGGTGCTGGTGTTTGACTTTGGCAGCGAGGTGTATGTGTGGCACGGAAAGGAAGTGTCTCTCGGGGACAGGAAGTTGGCCGTGCAGCTCGGGAAACAGCTGTGGAACGGGCCATACGACTACAGCAACTGTGGGGTCAACCCCCTGGACAGCAGTGGGATGAACGCGGAGGTCCTGCAGCAGGGGGAAGGTCGACCGGACTGGGCCCTGTTCGGCCGTCTATCGGAGCACAATGAGACAGCGCTGTTCAAAGAGAAGTTCCTGGACTGGGCTGAGTACCGCAGTGCCAAGGAGGACCCTGCAGTGGTAGAGGTCAAGTGTCCCCCGCACTCCCCGCACGAGACCGAGTTGAAGCCCTGTGATGCCAAAACCATGCTGGCATCCAGCAGCTCTCCTGTGCGCACCATTCTTGAAGGTGTGGACGTGCAGCGGGGCTACGGCCTGATCTCCGTGGAGGATCGGAGGCAGGCCGAGCTGGCCACCGTGTCCGTGGCCGTGTGGCACATCCGGGAGTTTGATGACTTCGAGATCCCCCAGGAGAGCGTAGGCCAGCTCCACGAGGGGGATACCTACATCATCAAGTGGACGTACTCCGTTACCAACGTGGTGGCTAAGAGGCAGAAGCCAGATCAGCTGAGCAGCAGTGGGCCAGGCCGGGAGCGCAGTGCCTGTTTCTTCTGGCAGGGCAGTCACTCGAGTGTCAGTGGGAAAGGAACGTCAGCCCTCATGACCGTAGAGCTGGGCAACCACAGAGGGTCACAGGTCCAGGTGGCCCAGGGGAAGGAGCCACCCTGCTTCCTGCAGATGTTCAAGGGGGGGATGGTCATACACAAGGGATCCCGAGATGATGATGCCCACAACACAGGAGGCTGGCGTCTCTTCTGTGTGCGTGGGGAGGTGCCGGCAGAGGGCAGCCTGCTGGAGGTGGAGTGCCAATGCAGCAGCCTGCGTTCCCGTGTCTCGCTCGTCCTTCTGCACGCTCAGCTGGGGGTGCTCTACCTCTGGCATGGCTGCAAGGCCCACGCCAACATCCGGGAGGTGGGCAAAAGGGCCGTGGAGCGCATCACACAACTGTGCCCTGCGGAGATTGGTCTCCATAGCAACAGCACGCTGACCGTACAGGAAGTGGAGGAAGGCTCGGAGCCCGTGGAGTTCTGGAATGCTCTGATCCGCCAGGACAGGAAGGCCTATGACTGTATGCTGCAAGATCCTGGAAAATATAACTACACGCCCCGACTGTACAGGATGAGCGCGTGCTCCGGTGTGTTCATAGCAGAGGAACAGCTGGGCCCCGCACGGATCTCGGGCTCTGTGATGGCTATGCCCTTCCTGCAGGAAAACCTCTACTCTGTCCCACAGCCAGCCCTCTTCCTCCTGGATAACCGGATGGAGGTGTACCTGTGGCAGGGCCAGCAGCCTGACGATGAGGAGTGTACCGGCTCGGCACAGATCCGCTGGGACTGCGAGAGGAAGTGCGCCATGGAGACTGTCCTGCAGTACTGTCAAGAGAAGAACCCAAGACGCCCCCCCAGAGCCTACCTGATCCACGCTGGAGCTGAACCCCTCACCTTCACCAACATCTTCCCCAAGTGGGAGGCACAGCCTAAAGTCAGCACCCAGGCAGAGGCTCTGCGGAACAAAGTGATTCTGGTCCAGGACGCCCTCGCCCGGCTCAGCAAGACGCAGTACTCCATTGAAGAGCTGCAGGCCAAGCCAATGCCAGAGGGAGTGGACCCCCTCAGACTCGAAATCTACCTCTCAGACGAGGACTTTCAGAAAGTTTTGGAGATGAAGAGGGACGAGTTCAACTCCCTTCCTAACTGGAAACAAATTAACCTGAAAAAAAGCAAAGGActcttctaa

Function

GO: NA

KEGG:

id description
K10369 SVIL; supervillin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016833 True 3957 mRNA 0.58 25 31777412 31801252

Neighbor

gene id symbol gene type direction distance location
AMCG00016831 NA coding downstream 14712 31755535 ~ 31762700 (-)
AMCG00016824 NA coding downstream 102916 31658248 ~ 31674496 (-)
AMCG00016823 nmt1,LOC102778525 coding downstream 123479 31643856 ~ 31653933 (-)
AMCG00016816 NA coding downstream 373468 31400817 ~ 31403944 (-)
AMCG00016811 NA coding downstream 440132 31336445 ~ 31337280 (-)
AMCG00016835 NA coding upstream 1785 31803037 ~ 31818127 (-)
AMCG00016834 NA coding upstream 38579 31839831 ~ 31844052 (-)
AMCG00016838 NA coding upstream 43210 31844462 ~ 31852119 (-)
AMCG00016837 LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582 coding upstream 177959 31979211 ~ 32002535 (-)
AMCG00016846 NA coding upstream 468711 32269963 ~ 32284040 (-)
G16069 NA non-coding downstream 6138 31769730 ~ 31771274 (-)
G16043 NA non-coding downstream 57376 31718900 ~ 31720036 (-)
G16026 NA non-coding downstream 78012 31699136 ~ 31699400 (-)
G16024 NA non-coding downstream 79804 31693816 ~ 31697608 (-)
G16004 NA non-coding downstream 162199 31604606 ~ 31615213 (-)
G16154 NA non-coding upstream 404471 32205723 ~ 32206877 (-)
G16153 NA non-coding upstream 405710 32206962 ~ 32208117 (-)
G16244 NA non-coding upstream 591890 32393142 ~ 32393380 (-)
G16245 NA non-coding upstream 614939 32416191 ~ 32416444 (-)
G16248 NA non-coding upstream 624464 32425716 ~ 32425956 (-)
AMCG00016815 NA other downstream 389144 31380547 ~ 31388268 (-)
G15787 NA other downstream 1247912 30526292 ~ 30529500 (-)
G15706 NA other downstream 1575061 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2551825 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 2991905 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 460297 32261549 ~ 32267968 (-)
G16247 NA other upstream 621806 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 696255 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1374824 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1590537 33391789 ~ 33434651 (-)

Expression


Co-expression Network