AMCG00016837 (LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582)


Basic Information

Item Value
gene id AMCG00016837
gene name LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31979211 ~ 32002535 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016837
ATGTCAGCCTTAAGGAGGAAATTTGGAGAAGACTATCAAGTTGTGAACACTTCCCGAGGCACAACGTACACCGCGCCGGCCAAGAAGAAGCGCCAGAGATTCGTGGAGAAGAACGGCCGCTGCAACGTCCAGCATGGCAACCTCGGAGGGGAGACGAGCAGGTATCTCTCGGACCTTTTTACGACTTTGGTGGACCTCAAATGGAGATGGAACCTCCTCATTTTCATACTGACATACACTATAGCCTGGCTGGTGATGGCATCCATGTGGTGGGTTATTGCCTATATCCGAGGAGACCTCAGACAGGATCACGACACGTCTTACACCCCTTGTGTGGCCAACGTGTACAACTTTCCCTCGGCTTTCTTGTTCTTCATCGAGACCGAGGCCACCATCGGCTACGGCTACCGCTACATCACGGAGAAGTGCCCCGAAGGCATCatcctgtttctgtttcagtccCTCCTGGGCTCCATCGTGGACGCCTTCCTCATTGGCTGCATGTTCATCAAGATGTCCCAGCCCAAGAAACGCGCCGAGACGCTCATGTTCAGCCAAGATGCGGTCATTTCCCAGCGGGATGGCAAACTCTGCCTCATGTTCAGGGTTGGCAACCTGAGAAACAGCCACATGGTGTCTGCACAGATCCGCTGCAAACTCATAAAGTCCAGGCAGACCCCAGAAGGAGAGTTTCTGCCACTGGATCAGTGTGAGTTGGATGTGGGTTTCGGGACAGGAGCTGACCAGTTGTTCCTCGTCTCCCCGCTCACGATCTGCCACGAAATTAACCCCAAGAGCCCGTTCTTCGACCTCTCCCAGAGGTCCCTCATGAATGAGCAGTTTGAGATTGTCGTCATCCTGGAAGGCATTGTGGAGACTACAGGAATGACGTGCCAGGCGCGGACCTCGTACACTGAAGACGAAGTCCTCTGGGGCCACCGATTCCTGCCGGTCATGTCCCTGGAGGAGGGCTTCTTCCGAGTGGACTACTCCCAGTTCCACGCCACCTTCGAGGTGCCCACCCCCCCATACAGCGTCAAGGAGCATGAGGAGAAGATCTTGCTGCCCTCCCCCGTCACCACCCCCATGCTGAACGAGTGCAGGAGCCGGAGAGAGCGGGTCTTCTCAGTGGACTGCATCGACACCATCGAGGAGCGAGCCAGCAGGCTGCCCAGCAAACTACAGAGGATGAGCTCTGGCAAGGATGACCTGCAAAAGAAAGTGCTGCGGATGAGCTCCAACAACCCGGAGAAGGCCTGCAGCACGGGGGACCTCCCTCTGAAATTGCAGAGGATTAGCTCGATGCCCAACCATGGCGAAGTAGAAGAAAGACTGCCACTCAAGGCCCTGAAAGTGGGTTCGGAGCCCATGACGCAGTCCACCGGCGACTTGCAAAAAACATCCATCGTGCCCAGCGGGGGGGCTAGGCCGGAAGACAACCTGCCTGCCAAGTTGCGCAAAATGAACTCCGATCGTCTGACTTAA

Function

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 1-like isoform X1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K04997 KCNJ3, KIR3.1; potassium inwardly-rectifying channel subfamily J member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016837 True 1485 mRNA 0.56 3 31979211 32002535

Neighbor

gene id symbol gene type direction distance location
AMCG00016838 NA coding downstream 127092 31844462 ~ 31852119 (-)
AMCG00016834 NA coding downstream 135159 31839831 ~ 31844052 (-)
AMCG00016835 NA coding downstream 161084 31803037 ~ 31818127 (-)
AMCG00016833 NA coding downstream 177959 31777412 ~ 31801252 (-)
AMCG00016831 NA coding downstream 216511 31755535 ~ 31762700 (-)
AMCG00016846 NA coding upstream 267428 32269963 ~ 32284040 (-)
AMCG00016849 NA coding upstream 302115 32304650 ~ 32325161 (-)
AMCG00016850 NA coding upstream 380148 32382683 ~ 32383195 (-)
AMCG00016856 NA coding upstream 435701 32438236 ~ 32469626 (-)
AMCG00016860 NA coding upstream 467360 32469895 ~ 32470107 (-)
G16069 NA non-coding downstream 207937 31769730 ~ 31771274 (-)
G16043 NA non-coding downstream 259175 31718900 ~ 31720036 (-)
G16026 NA non-coding downstream 279811 31699136 ~ 31699400 (-)
G16024 NA non-coding downstream 281603 31693816 ~ 31697608 (-)
G16004 NA non-coding downstream 363998 31604606 ~ 31615213 (-)
G16154 NA non-coding upstream 203188 32205723 ~ 32206877 (-)
G16153 NA non-coding upstream 204427 32206962 ~ 32208117 (-)
G16244 NA non-coding upstream 390607 32393142 ~ 32393380 (-)
G16245 NA non-coding upstream 413656 32416191 ~ 32416444 (-)
G16248 NA non-coding upstream 423181 32425716 ~ 32425956 (-)
AMCG00016815 NA other downstream 590943 31380547 ~ 31388268 (-)
G15787 NA other downstream 1449711 30526292 ~ 30529500 (-)
G15706 NA other downstream 1776860 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2753624 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 3193704 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 259014 32261549 ~ 32267968 (-)
G16247 NA other upstream 420523 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 494972 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1173541 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1389254 33391789 ~ 33434651 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032675 kcnj3b coding NC_007117.7 CM002890.2 13276022 ~ 13308813 (-)