AMCG00016838


Basic Information

Item Value
gene id AMCG00016838
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 31844462 ~ 31852119 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016838
GCGTGTGCTGTCATTTTGCGCATTTTACGTAGCTCGCTGGAGTAGGTTGCGCTGCCGCTGGTATAAGCCAATCAGGAGAGACCAGGAAGAACAGAGATCGGAATCGCGATCTGTGGCAGGGGTGTCGCTTCACAGCCAGACTTATCGCCAGCAATAATGTGGTTTGCAGCAGCGTTTGGGATTTTAGCTTTCATAGTGTTATTGTACAAATATGTCTGTGGCAGAGCCGGACCCAACCCGTTTGCTGCTGATACGCGGGAACCTCCGAGACCCCTGGTGACGAACaagcaggagaaaaacaaagtccTGAAGCAGGGCTTCCTGGCCAGCAGGGTACCGGAGCACCTCGATGCCATCGTGGTGGGCAGCGGGATCGGGGGGCTGGGGGTGGCGGTGATGCTGGCAAAGGTTGGCAAGAAGGTGCTGGTCCTGGAGCAACACGACCGCGCCGGAGGCTGCTGCCACACCTTCACCGAAAAGGGATTTGAATTTGATGTCGGGATACACTACATCGGAGAACTACTGGAGCACAGGCCTTTCCGCTGCATGATTGACCAGCTGACAAATGGGCAGCTGCAGTGGGCCAGTCTGGACAACCCTTTCGATAAAGTGGTTCTGGGCCTGCCTGGGAAGAGACGGGTCTATCCCATCTACAGTGGGAAGAAGAGGTTCCCTGAGGAGCTGAAGAAGTTTTTCCCAGGGGAGGAAGAAGCCATCGATAAGTTCCTCCAGCTTGTAAAGAAAGTTGGAAAAGGTGTCTGGTTTATGGCTGTCCTGAAAATGATCCATCCACGATTGGCCAAGTTTCTCGTCTACTCTGGCCTGGTGAATTGGCTCTCTCCATTCTTTAAAATGGCACCCAGGAGCGTGACCGAAGTGGTCAATAAACTGACCAGCAACGAGGACCTCCGAGCTGTGTTCAGTTACATTTTTGGTACCTATGGAAACATTCCAAAAGAAGCCAGTTTTTCGATGCACAGCCTGCTGGTGTGTCACTATTTGGAGGGCGCATGGTATCCTAAAGGGGGCGCCAGCGAGATCGCCTACCACATGATCCCCATCATTGAGGAAGCGGGGGGCGCTGTTTTGGTTCGTGCTCCAGTCCAGCGCATTCTGATAAACGATGCCAAGCAAGCCTACGGTGTCAGTGTGATGAAAGGCCAAGAGGAAATTAATGTCTATGCACCCATCGTGATCTCCAACGCAGGACTCTTCAATACCTACCAGCAACTTCTACCTCAAGAAGTTCAAACCCTCCCAGCTATCCAGTCCCAGCTCAGCATGGTCCAGCACGGTGAGGGAGGTCTGAGTATCTTCTTGGGTCTGAATGGAACCAAGGAAGAGCTGGGCCTGAGAGCTGACAACTACTGGATCTTTCCAGAAAATAACCTTGATGAGTTGGTGGAAAACTATATGAATGCCCCAAGAGAGGAAGCTGCTAAAAATGTGCCCCTGCTTTTTGTCGCATCCCCTTCAGCCAAAGATCCCACCTGGGAAGAAAGAAATCCAGGCAAATCCACCCTTACCCTTGTAAGCTTTGCCAACTACAAGTGGTTTGAAGAATGGAAGGATGGAAAAGTCTCCAAAAGGGGAGAAGACTACAAGGAACTCAAAGAGTCATTTATCAAGTCAATTTTGGAGGTCGTTGTGGAGATCTTTCCACAGATCAAAGACAAGATTGAGTTTGTAGATGCTGGGACTCCCGTTACACATCAGTACTACATCGCGGCTCCCCGGGGCGAGATCTACGGCTGCGATCATGGCTTGGCCCGCTTCAACCCAGAGCTCAGTGTTGCCATCCGACCCGAGACGCCCATCAAAAACCTCTTCTTGACCGGGcaggatgtgtttgtgtgcggtTTTGCCGGAGCCCTGGCTGGAGCTCTCACCTGCGGTTCGGCCATCCTCAAGCGTAACTTACACTTGGACGTCATTAACATGGCCAAGGCGCGGCAGAGGGACGACCACAAGAAGGACCAATAGGAAGCAGCACGATTGCCCCTTGGGTGTACAGCTCTTAAGAAAACAAGCACCATCAAACTTAACTGTCCAATTGTCCAACCCTTTGGTGTGAATGTATGCTCTCTCTACGAGCATCTAAATCGGGCCTAGTAAGGCTTGAGCATACATTGTTGTTGTGCCTGGGGGGGCTTCACGTGTATCTGGTCTCTGTCAAGGCTGCTGTTTTTCATACAACCAGCAGGCTTCTCTGTATTGTACCAAATCTATTATCACATTGATCTGTACTACACAAGGGTAAGGAAAAAACTCTTGAAGAGCTCATTTCAAATTCCTGTTATCTGCAAACAGTTTTCAATTTAATACAaccatgtactgtattttgtaaggTACTTAAACGTATATAGACTTCtaatgtgaaacaaatattgTGCTGAGGTTTTAGGATTGCCTAGTCAATGTTACTGTAAGGATTATGCACTCTTACTGTAATGTGTTACCAAAATTATTTGATTgctctgttttaatttaaagaattaaAGTGTGCTGGATATTCCTTATAATGGGTGATgtagaaatatacattaaaaagagtGTTTGTTTCCCTGTAGTGTCTTATAATAGTACTTctgctgtatttaaataactgacaaactagttttgttttttactgaatGTACTACTACTATGCAAAAGATGCCTTACTTTCGTACTCTCAAATTTAGTACGCTTGCACATCCACTGGAATGATGACTCTTCAATAAAGGATTTCTAAAACAGacgttatttttattatatccCAGCTAACTGCTTCAGAAAACGCATTCTTCCTGATGTCTGTAAGTATGTGAACAAACTGTAAGATAAATCTTTTCAAGTGAGAAGGAACAACATGTACAACTGATGAAAGAATGATTAACTAAATTAGAAGTCTGTGCTCTTCTGAAGAGTTTTTTTAAGAGTGTCcgacttttaaatgtgttgttttaattttctaataGCAATGAAA

Function

GO: NA

KEGG:

id description
K09516 RETSAT; all-trans-retinol 13,14-reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016838 True 2968 mRNA 0.46 11 31844462 31852119

Neighbor

gene id symbol gene type direction distance location
AMCG00016834 NA coding downstream 410 31839831 ~ 31844052 (-)
AMCG00016835 NA coding downstream 26335 31803037 ~ 31818127 (-)
AMCG00016833 NA coding downstream 43210 31777412 ~ 31801252 (-)
AMCG00016831 NA coding downstream 81762 31755535 ~ 31762700 (-)
AMCG00016824 NA coding downstream 169966 31658248 ~ 31674496 (-)
AMCG00016837 LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582 coding upstream 127092 31979211 ~ 32002535 (-)
AMCG00016846 NA coding upstream 417844 32269963 ~ 32284040 (-)
AMCG00016849 NA coding upstream 452531 32304650 ~ 32325161 (-)
AMCG00016850 NA coding upstream 530564 32382683 ~ 32383195 (-)
AMCG00016856 NA coding upstream 586117 32438236 ~ 32469626 (-)
G16069 NA non-coding downstream 73188 31769730 ~ 31771274 (-)
G16043 NA non-coding downstream 124426 31718900 ~ 31720036 (-)
G16026 NA non-coding downstream 145062 31699136 ~ 31699400 (-)
G16024 NA non-coding downstream 146854 31693816 ~ 31697608 (-)
G16004 NA non-coding downstream 229249 31604606 ~ 31615213 (-)
G16154 NA non-coding upstream 353604 32205723 ~ 32206877 (-)
G16153 NA non-coding upstream 354843 32206962 ~ 32208117 (-)
G16244 NA non-coding upstream 541023 32393142 ~ 32393380 (-)
G16245 NA non-coding upstream 564072 32416191 ~ 32416444 (-)
G16248 NA non-coding upstream 573597 32425716 ~ 32425956 (-)
AMCG00016815 NA other downstream 456194 31380547 ~ 31388268 (-)
G15787 NA other downstream 1314962 30526292 ~ 30529500 (-)
G15706 NA other downstream 1642111 30201459 ~ 30202351 (-)
AMCG00016740 ormdl3,LOC108273759,LOC107723636,LOC107657273,LOC107556587,LOC102217224,LOC106521946 other downstream 2618875 29201872 ~ 29225587 (-)
AMCG00016732 NA other downstream 3058955 28781472 ~ 28785507 (-)
AMCG00016847 NA other upstream 409430 32261549 ~ 32267968 (-)
G16247 NA other upstream 570939 32423058 ~ 32423438 (-)
AMCG00016859 NA other upstream 645388 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 1323957 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 1539670 33391789 ~ 33434651 (-)

Expression


Co-expression Network