AMCG00016856


Basic Information

Item Value
gene id AMCG00016856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32438236 ~ 32469626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016856
ATGCGCGACCCGTTTCCCGTTAACCCGCTGCGGGGCGTGAGTCATGCGGCTGCAGGCCGGGCTCGGCGGAGAGGCGCTGATTCACACGGCGGCGCGTCCTCACAGCCCCGGCGCTGGCAGCTCCGTCTCGCCGCAGACAAGTTTCCaattaaacctgaaaaaaaGTCCTGCAGCCCCTTCCGCACAGACTGCACTGAAGCGACCAGAGCAGAGAAGTGGCCAGTGGTGTGGCAGGCGGTCGTGCTGGACGCTTCTCCGCTCCAGtgtgataataataaagacGTCATCCGCCGCTCCGGCTGCGCTAAGTGCGCAGCTCCCGACTGGAGTGTAGTACAACAACAATCTCAGCATGGGAGCAGACAACACGGGCATCTGCACATCCACGCACCCCTGCGCCTGAGCAGCCCCTCTCCGGTTGTGCCTCGGGTCCATCCCCGCAGCAGCATCGGCGTGATGATGGAGGAGACCACTGCCCCCCAGCCCAGGAAGCCTCCCAAGAGCCTGGTGGAGTGGAGGAAGCGGGTCAAGTCCGAATACATGCGGCTCAGACAGCTCAAGCGCTTCCGCAAAGCAGAGGAGGTCAAGTCCCAGTTCATGTCCAATCGGAGCAAGATCAAGGAGAGGACGGAGCTGCTGAATGAAGAGTGGTCCAAACTGAGGATCCAGCCCATTCCCATGGCCCCGTCCATTGGATCGCTCAGCAACAAAAAGCAGTGTGTAGTAGAGTATGGATTCCCCGGATACAAGAACCAGACCATTGTGATGCGAACGCTGAACACAGTGGCCGGCACCCCCTTCATGTACTCCTGGTCACCACTCCAGCATAACTTCATGGTGGAAGATGAGACATTTCTGCATAACATTCCCTACATGGGCGATGAGGTGCTGGAGCAGGACGAGGCCTTTCTGGAGGAGCTGATTGACAATTACGATGGTGTGCATGGAGACCGAGAGGGGGGCTTCATCAACGATGAGATCTTCAAGGAACTGGTGGAGGCCCTGAGCCAGTACTCAGACCAGGAGGAGGATGGGGAGGAGGGCGAGGGCGAAGGGGaagaggtggaggtggaggaggaggaggaggaggaagaagaagaggaggaggtgaagagcatgggggagggggaggaagacACCAATGTGGATCCCCTGGCCTTTttcaggaggaagaggaagaccCTTACTGAGGGGAGCGATTCCGACACGAATAAGAAGATTCCCCACAATAAGATTTTCAAGGCCATAGCCTCCATGTTTCCATATAAAGGCACAGCAGAGGAGCTGAAGGAAAAGTACAAAGACCTGCTGGATCCCCCCAGCCCCGTCAAGCTGCCCTCCCAATGCACCCCCAACATCGATGGACCCTGTGCCAAGTCTGTGCAGCGGGAGCAGTCTCTCCACTCCTTCCACACCCTCTTCTGCCGCCGCTGCTTCAAATACGACTGTTTCCTGCACCAGATTCGCATCGAGACTGAGCCCTGTGGCTTGGACTGCTTCCTGCTGCTGaAAGGGGCGAAGGAGTTTGCCGACCAGAACATGCTGAAGAGTCACCGTTTGCGGCGGCGGCGGAGGCGACCCAAAATCCCCAGCTCCAGCTGCCCCGGCTCCTCCGCCTCCGCCGGGGACGTCAAGGACAAGGAGGGTGACAGCGACCATGAGACCACCAGCTCCTCAGAGGGGAACTCACGGTGCCAGACGCCCATCAAGATGAAGCAGGGCAGCGAGGTGCAGGAGGAGGATGAGGTAGTCCAGTGGAACGGGGCGGAGGAATCGCTGTTTAGGGTCCTGCACGGTACCTACTACAACAACTTCTGCTCCATCGCCCGGCTTATTGGCACCAAGACCTGCAAACAGATCCAGCTTAAGAAAGACAATTCGTCCAATCAAGTGTACAACTACCAGCCGTGTGACCATCCTGAGCACCCGTGCGACAGCTCCTGCCCCTGTGTGATGACCCAGAATTTCTGTGAGAAGTTCTGTCAGTGCGACCACGAGTGCCAGAACCGGTTCCCGGGTTGCCGCTGCAAGACCCAGTGCAACACCAAGCAGTGCCCCTGCTACCTGGCTGTGCGGGAGTGCGACCCCGACCTGTGTATGACCTGCGGGGCGGCCGACCACTGGGACAGCAAGAACCTGTCCTGCAAGAACTGCAGCATCCAGAGGGGACTGAAGAAGCACCTCCTTCTGGCTCCGTCAGACGTGGCCGGCTGGGGCACCTTCATCAAGGAGCCGGTGCAGAAGAACGAGTTCATCTCTGACTTCCTATTCAACCTGAACAATGACTTTGTCGTGGACGCCACCCGCAAAGGCAACAAAATCCGCTTCGCCAATCACTCCGTCAACCCCAACTGTTACGCTAAAGTTGTGATGGTCAATGGAGACCACAGGATAGGGATCTTCGCCAAGAGAGCCATCCAGAAAGGCGAGGAGCTGTTCTTTGACTACAGATACAGCCAAGCGGACGCACTGAAGTACGTCGGGATTGAGAGGGAGATAGACGTCATGTAGCCATGGTGACCTGGGGTACCTCACCTGCGCCCCTCTCCTTCTGCTCTGTCAGTGATGTTGTCCTTGTCAGCGCTGGGGCATCGGATGCGTTGCTCTGTTGTTGGGGTTTGCCCACAAATGAAGGACTCGGGTAACAGTCTCTGCCCGTTCCCGTAGCCCTGTACCATTATCATCACATCGCTGGGCTATGTAACAGCACCAGGCACTTCTCTGGGTGGACAGTCCTAGACTCCCAGACACGGTGCACTTACCATGAAGGTCCAGAGCGGGGGTAGGCAACTCCAAACCATAGGGCTGATTTGCTTAAGGCTCTGCTGGCGCCTTTGAATTGGTAAGGGAGTCAGATAGCTGAGCGATCTCTCCACAATTAAGATGGGAGATGGCATGAAAACCAGAGACAAATGTGGCCCTGTGTGTAACTGGAGCTCTCTACCCCTCCTCTTCATCAACTCCAGCACTAGCTAAAGTTGCTGCATTCATTCTTGGAAGgctgtttaatttttttctacTTACTATTGGCAAAAGCAGCTGAAATCTAAGTGTCATTTCACAACGGGCTACATCTGCTGGGCTTCACAACATCagctgtgtctctgtatctgagccgcccccccccccgtttCACCTGTTTGAAAACAAACCCTTTGTACAATTGGCTCTCGTTCAACAGGAGAAAATCCCTTCCAATCTCTCACCTGAGTCTTTCACAGCAGAGCAAACTACAGCAATCCTTCAGCCAGACTAGCTTTATTGTACTTATTGCTTTTTGTATCCATGAAGGCACACAACCTCTTATTCCAATGTAAcgtttcttttcttcagaaatcaGACTGCAGATGCAGGGACAGTGTCTCCTGGTACGGTAGAATCAGAGGTCTGCTTAAGCTTTTTGAAACACTTCTCGCTGGGAGGAAATATAGTGCTGGGCAGCTTTTCTGTGTTGCTAATGTTGCAGCTGCTTGCCTCAGTGGGTTTGCAAAAACATGTAATAGATTTCCtgcaaagcaaacattttaaaaccgacaaaatgaatgtgtgcttttgtttaattatgacTGATCCAGAGTAGAGCTGGACCTTCAACACTCACGCATGGTGCCTGTATGTCTAGGAGTCCCTGCTGTTCCCGGTCTATTGTTGGCCTCCCTGTGGTACGTTACTGCTGCACCAGAAAGAAACACAGGACTGAGCCCTCTACCTTGCCTGTGAGGGACTACAGCACCAATATACAGACAGCAGTGCAGCCACGATCGCTATGGTCTCTTTCACTTTACCTTTCACCAGAATGGCTGACTTTCAATGCCTTTtgcacttgtttattattattatcataatacaattattagtgACTTGCAGTTAaaaaactggttttatttttggaaactcAAAAGTGGCATAATGCAAAAGTTAGACtagtggaaaaagaaaagaaaatacagcacagtacagtaactGCAGCACATGTAGTTAAATGGCATTTGTGTGGATCatgtatgttattgttttctacagtttgttaatattttttaactttttgtccGACTATAAGTTAAGTGCCACCTCTTGCCAGATTTCCTTTGAGAACCTCCTCCACACGTCTTCGACAATACAAACTTATTATTATGCAAAtctgaattatattaaatacaaatcatggTTGTTCAATTTCACCTGAATGTTCAGCTCAGATACCTTCTTCTTATttctaaattgatttaattagaaagCTGAACATAAAACCGCTAAAGGGGAACCGATCCAGCCTCGGGCACATAGCAGGTCCTGTGGAGAGTCAGAAGGATGGTCTCTATTCTGTTTGTTCTGCTAATCACAGCTTAATGGTTTTACTCAATGCATCAAACAGTATCAATCTCTGTAACTACTTCTCTTCAAATGACTAAACTGTTTCAGTTGAGTGAGAAAGATACTTCTCCCCTCCTCCTACAGAGACAAAAAAGTATGTTCATACAGAAGATCTGGACTGAATAAGATCACCTGCCCTTTACTTATCTGTGTTTCTAGTTTCTTCCCTAAAATacaagggaaaaataaattctcTAGGCACTTAATtgtagctttattttctgtgttaataaatacatctatataaatatatacaaataaaaacatggcaaaTTATCTCTGTGAGGCAGGTGACAGTTTTCCaaatagttgtattattatgatttatataaataatattaccATCATCATCTTAGTGTAGGAGCCTCCCATTGACTTCCTGTGTGAACAAATAGTAGAGTAACTTCGAAAGTACTGAAGTATTCCCTTTCAAATGAAGTGGCCAAAATAGTAACttttgacaaaaaaagaaaagcaggagaGTTCGTTGGGTTTTTAGTACCTGTTTTTAATGTCATGAAATTTCGATTCCGCAATCAACTAATTCCTTTTTAATCAAATGGATAATGGATTGATGTCAATGTGTCTGGAATTACATCCTTAAAAGCAAAAGCCCCAAGTATAAACGACTATTGAAGGTGTATATCTAGTTTagattaatgtatatttttagtcCATTCTTCTATGAACAAAATTATCTCCGACTTGTATcctaataatatattctgtataccatTATCTTGCCGTATATCTTAAATATGACACCCCCAGTTTACTGTGGGCACTCTGTGTTTGAAGACCGTGAAACTGCTGTTACAATTTAGCTTCAAGTCGAAGATAACAAGCAGTTATAAATAAGCTGTTgcaaccatccattttcaaagctgcttatcctggtgagggttgcagggaagccagagccaatcctggcaggcatagggcacaaggcaggaatacacccagcacaggatgccagtccattgctgggcaacacacacacggcaatttagagagaccaattaacctaacccacatgtctttggatggtgggaggaaactggagtgcccaGACAAAACCCAGGCAGGCAcagagaacatgcaaactccacacagacaggcccccccaCTGGGACTCAGAGCTGTGaagcagcagtgctaaccaccacaccactgtgccaccctTGGCTGttacatattaaatgtatatagtatCTAAAGGTATTTTAGTGTGTTTTAcgttacaaattattatttaaagaagtTATTACAAATTGACCATTAGAATTGATCTTAAGTTATTGGATAACACACGGTATGGAGAAAAAAGTACTGTATATTCATATcagtatgtttaatttatatacatggACCACCATCATAAAATGACTAAGTCGAAGCCTATCTGAtatatcacaaaaacaaaaccacaaggGGTTTTCCACAAAAGTGAAACTGATCTGAGTTGGGTATCTGTTTTAGATGTTCTGAGCTAAAGAAACctttttctgtcatttgtagattttggttttattttttgcctatGTCAGAACTACAAGCCTGCTATGATCACGAGAAATCCAAGAAGGGGTAAATGTTTAGTAAGCAGATATGGGAATGGCTATATTCAATTGAAATAGGTTAaagtgatatttttattttatgatcatTATTTACACAATTGGAGATATTTGGGAGCCATTAATACATccctttttaaacttttatcattgttattttataagCATGGCGCATTACTTGCATTTCTCAAGATCTTCAATTCAGCAGCCGACAATATCAGGATTATTTTTTTGATGGGCTTTAATTTTCATAGCCTGTTACCGTTTCATTACAGCTCACCAATCAACATGGAACAGGGGAATTATTTCTGAAACCACATGAAAGGATAATTTTGATGTTCTGAAGGACTGTTGCTTTTGGCTCAGTGGTGAAATCCAGCCTCCTGgtcattattttatgaaatataaGCTAATAACGATAAAAGCACTATATAACCGAAAGCTGGAAACAATGTATAAATCACTTCCTGTAGTTAGTGCTTCTGCCTACGACTGAGAGATATTACTGGCAATTAGTGCGTTACTGCTCTTGCAAAAGGAAAAGTAATGAATGCCTTGTGTAACGCGTCTGTGGCACAAAGGAAACGCTTCGCCCAAGCTAACCTGTCTGTGAAACAAGCGCTTGTAACAGTATGTTGCTGCCATACATTAGCCCTCCTCGGACGTGCCGTTCAGAGCCTGGTTTAATTCACATTATTGTGTCAGGCAAACACCATTTGCAATTGCAGACTGACGTGATGCAAAACATTTGTAACGTAACTGTGGTTTACTGTAACTTATTTGTAAAACTCTTGtattcattaaaagaaaaacatttaatcccGCC

Function

GO:

id name namespace
GO:0016571 histone methylation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016856 True 6777 mRNA 0.47 21 32438236 32469626

Neighbor

gene id symbol gene type direction distance location
AMCG00016850 NA coding downstream 55041 32382683 ~ 32383195 (-)
AMCG00016849 NA coding downstream 113075 32304650 ~ 32325161 (-)
AMCG00016846 NA coding downstream 154196 32269963 ~ 32284040 (-)
AMCG00016837 LOC106607518,LOC104946854,LOC106600796,LOC102209712,LOC101480582 coding downstream 435701 31979211 ~ 32002535 (-)
AMCG00016838 NA coding downstream 586117 31844462 ~ 31852119 (-)
AMCG00016860 NA coding upstream 269 32469895 ~ 32470107 (-)
AMCG00016858 wnk4b,LOC107754305,LOC107582920,LOC107585056,LOC107740640,LOC107683678,LOC108429078 coding upstream 38723 32508349 ~ 32533759 (-)
AMCG00016857 wnk4,LOC108257086,LOC108429078,LOC105912834 coding upstream 75993 32545619 ~ 32546814 (-)
AMCG00016862 NA coding upstream 114393 32584019 ~ 32590534 (-)
AMCG00016864 NA coding upstream 204691 32674317 ~ 32692351 (-)
G16250 NA non-coding downstream 1553 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 10156 32427852 ~ 32428080 (-)
G16248 NA non-coding downstream 12280 32425716 ~ 32425956 (-)
G16245 NA non-coding downstream 21792 32416191 ~ 32416444 (-)
G16244 NA non-coding downstream 44856 32393142 ~ 32393380 (-)
G16292 NA non-coding upstream 385155 32854781 ~ 32857465 (-)
G16293 NA non-coding upstream 389615 32859241 ~ 32861597 (-)
G16325 NA non-coding upstream 514628 32984254 ~ 32984464 (-)
G16375 NA non-coding upstream 786027 33255653 ~ 33256382 (-)
G16377 NA non-coding upstream 814388 33284014 ~ 33284227 (-)
G16247 NA other downstream 14798 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 170268 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1049968 31380547 ~ 31388268 (-)
G15787 NA other downstream 1908736 30526292 ~ 30529500 (-)
G15706 NA other downstream 2235885 30201459 ~ 30202351 (-)
AMCG00016859 NA other upstream 27881 32497507 ~ 32507319 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 706450 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 922163 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 1019099 33488725 ~ 33513579 (-)
G16563 NA other upstream 1637064 34106690 ~ 34107941 (-)

Expression


Co-expression Network