AMCG00016859


Basic Information

Item Value
gene id AMCG00016859
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 32497507 ~ 32507319 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016859
ATGCTCTCTCCAAATCGGTCCAATCTTCGAAGTGCTCGGTGGTGTGTGGTGGACCCTTCGGCTGGAGGACACTACTTCCAGTGCTGGAGGGgacaaaagaagaagaaaaaccaACATTTTTGGAAAGAAGGAGGAAAGGGAAAAGCCATGATCAAACCCTTTCGCTTCTGGCTCTGTCTGTCACCACCCCCTTGTCCTCTCGTGGGACAGCGTCAGGCCGTCACTACATACTCCGCCCTGCTGCAGTTTGTCACCGAGCTCAAGAGACAGACTactattatGCAGCCCCCCACAGTCCAGTgcccagctcagctcagctcagctcagttGGCTGAAGTCTTGGGTCCCCTCATTCTTGCGACCTTGGCTTCTGCGTCCAGCTCGTCCAGGATCTTCTCCTGGGACACCGAGTAG
>TU20188
TATGTTAACCCGTTTATTGAGAGCTGAAAACAAAACGGAGAAATTTAAGAACATGATTTCTATTTGACAAAGTTTTTTGGTtgcttatttttccattttaatgaaggcaaaaaatatacatgtagaTTTAAATTTACAGaacacataaaatgtatattcctAAATATAAACAATCAGTTTCAGACCAGCTGCAAAATCCAACCCCCTGTGGGTGAGAATAGTAGTGCGTGCTCTGGTCTGTGCCTCTTGAATCAGCATTTACAAATATCCAGAGACTTCAGATAGTCCAGTTGAGAGCTGGTGATCGAAGGGTGGCTCATCTGGTCAACTCCAGTGCCTTCAGCTGGTGTCTTCAGTTACTCAACAAAGGGGCtccaattaaattattaaaagaatTACAGAATGAGCACAAGAAAATTCCTGATGAATCAACATACAAACAGAAGCAGGTCCCCATTGTTCCCAATCCCCACCAGCCCCTGATCCTCACTCAAACAGGCTGACCACTCCCACATTTCCACTCCTCTTATcccccagctctctctctgtacagatGCAGCCCCCCACAGTCCAGTgcccagctcagctcagctcagctcagttGGCTGAAGTCTTGGGTCCCCTCATTCTTGCGACCTTGGCTTCTGCGTCCAGCTCGTCCAGGATCTTCTCCTGGGACACCGAGTAGAAAGTGTAGCCATCTAAGAGCAGCAGTCAAGGCAACCTCAAGATCCACCATTGACAAATAAATACCCCCTGAGCTGTGAACCCCATGTTGTGTAGCTGCCCAGAGATCACCTGGGTTCAGCCACATCTTCCACGTCACAGGTGAAAATAGAATCAGTTCCTGAGACAGAACTGGTTGATAATCCCGCAAGTGAACTAGATTGGAGGGGATGCTTTAGTTAACTTGAAATGAAGCGTTTAGATAGAACATGTCGTCTCATAGCAATAATACTTCAGATTTAAGAGTTTACATAGCTTTCTAGAATATATCTACGTATAAAGATAAATAGACAGAATATGTATATCTGAAGCACTAATCCCAGTAACGAGATATACATTGCTAGCTGTTAGTTCACCAGAAATCTCACAGCACTAACGGAGTGTGTGCAACTAAGcagcaatatattatacatacatacatacatacatacatatatacacctcTATGTACCGTACTGGGACATGCTGCTCTTGAGAAGGATACAGATCCCCATCACCAGTGCCCCGATGGCCAGCCCCGTCGCCACATTGCGGCCGCGCAGTTTCTGGGCTTTCTTCttccactgctccagctccactTTACGGATGAACTGCATCTGCTCCGGGGTAAGAGGCTCCTTCACCGGGTCAATCCTTTTGGCGAAACTGGCCTGCGAGTCCCCTTGAGCTCCCTCGTCCGCCATCTTTACTCCGAGTGAGTAGGAGGAGACAGAGCCGACCTGTGAACTTTGAACTTCAACAGGAGAGCAGAACCAGACAACTGCGAGGCTTTCTCCGTGTTTTTGCCGATGGGCACATTGAGGGACGTCCTGAAGCGGATGGGCACGGTCCTCTCGTCCGAGCCGGGCTGCTGAAGCGGCGGCGCCTCTATTTTCAGATGCCCGTCCGGGCTCAGGGAGCAGGTGAGCGCCGCCAGGTCCGCCTGCTGGGGCAGCTCGATCTCCTGGCGGAACTCCTTGTGTCCGGCCGCCGTCGCCTCCTTGCCCGCCTCCTCCTGCTTCAGTGCGCTGACAACCAGCTTGCTCCCCACCAATTTCACCGTGATGTCTTCTATGGAAAACTCCCGGACGTCCAAGGCCAGCTCCAGCTTATTGCCGGCTTTCAGCGCGCCGTCCCTGGCAccgttgctgctgctgccgccggCGGGATTCATCAGCTGCGTTCGCCCCACAGTCGGGCTGCGCGCCGCGCCTTTTAAGAAGTCGTAAGGAAACGCGTCGCAGAAGTCCTTCATGAAGTTGTCCATCATGGCAGATCTTCTCCGCATGAAGTTCTGCTCGAAGTCCGCAAAACCCGCATTTCGGAGAGGCCACAGTATGCGAATTGTAGGCTGGTCAAAGAGGCTACCGTTGGAGAAACGGGTCTCGGTTCCCGAAGTCTGCATCAGCATGCTAGCTGTTATCAGTGAGAGGCTGCTTACTCTGTGAATATCGTCTTCTGATTAAATGCAACCAGTGACTTGTGCACTTTTATAAAGCTTCTTGGAGTACTAGAACATTCCTCAGGGACGATCTTGTTATAATGTAATCCACGAAAAGAGAAATGATTGCCCCTGCAGGGTGGTCACAGGCTAAAAGAGTGCTGCGGAAGCGCTTTTAAATGCTTCTGCTATTTACCAACTCTGCTCCTGGAGGTGTCATGTTTAATAGCTGTGGGATCAGCTTGCTATTCGTAGTCATGAGGAAATCCGAAAGATATGTTCGTGAATGTTTGGCCTTAACTGTGcaattgtaaaaaaagaaaaaagagtgTATTATTAGCTGGT
>TU20192
tatgttaaaatacaataactgtTTATTAAACGTTACACACAATTGAACAAGGGAGAGGGATCAACCAATCGCAGAGCAatgtcaatatattttaaaattaatatatgaagTATGGTGTCAACATATTATGTTTAAGCCCTTTTAACTAATTGTGTCCGTTCAGTTTAAAACTCAGTTCATCGTAGGGAATGTCGACATCTTGTCCAATAATACAGTCCCAGGTTTTctcttgtataaataaaaacacTTCGTACAATAATAAACGCACAGCCATACATGGAGCAATGctaatgttcatttaaaatgacacGGGCTTATGTGTCTAAACAAATAACAAGTTCCCTGTGTCTTGTCTAGGCTTTCTCCGTGTTTTTGCCGATGGGCACATTGAGGGACGTCCTGAAGCGGATGGGCACGGTCCTCTCGTCCGAGCCGGGCTGCTGAAGCGGCGGCGCCTCTATTTTCAGATGCCCGTCCGGGCTCAGGGAGCAGGTGAGCGCCGCCAGGTCCGCCTGCTGGGGCAGCTCGATCTCCTGGCGGAACTCCTTGTGTCCGGCCGCCGTCGCCTCCTTGCCCGCCTCCTCCTGCTTCAGTGCGCTGACAACCAGCTTGCTCCCCACCAATTTCACCGTGATGTCTTCTATGGAAAACTCCCGGACGTCCAAGGCCAGCTCCAGCTTATTGCCGGCTTTCAGCGCGCCGTCCCTGGCAccgttgctgctgctgccgccggCGGGATTCATCAGCTGCGTTCGCCCCACAGTCGGGCTGCGCGCCGCGCCTTTTAAGAAGTCGTAAGGAAACGCGTCGCAGAAGTCCTTCATGAAGTTGTCCATCATGGCAGATCTTCTCCGCATGAAGTTCTGCTCGAAGTCCGCAAAACCCGCATTTCGGAGAGGCCACAGTATGCGAATTGTAGGCTGGTCAAAGAGGCTACCGTTGGAGAAACGGGTCTCGGTTCCCGAAGTCTGCATCAGCATGCTAGCTGTTATCAGTGAGAGGCTGCTTACTCTGTGAATATCGTCTTCTGATTAAATGCAACCAGTGACTTGTGCACTTTTATAAAGCTTCTTGGAGTACTAGAACATTCCTCAGGGACGATCTTGTTATAATGTAATCCACGAAAAGAGAAATGATTGCCCCTGCAGGGTGGTCACAGGCTAAAAGAGTGCTGCGGAAGCGCTTTTAAATGCTTCTGCTATTTACCAACTCTGCTCCTGGAGGTGTCATGTTTAATAGCTGTGGGATCAGCTTGCTATTCGTAGTCATGAGGAAATCCGAAAGATATGTTCGTGAATGTTTGGCCTTAACTGTGcaattgtaaaaaaagaaaaaagagtgTATTATTAGCTGGT

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process

KEGG:

id description
ko00680 Methane metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016859 False 414 mRNA 0.55 3 32502565 32507319
TU20188 True 2491 TUCP 0.49 3 32497507 32503252
TU20192 False 1355 TUCP 0.41 2 32497507 32498895

Neighbor

gene id symbol gene type direction distance location
AMCG00016860 NA coding downstream 27400 32469895 ~ 32470107 (-)
AMCG00016856 NA coding downstream 27881 32438236 ~ 32469626 (-)
AMCG00016850 NA coding downstream 114312 32382683 ~ 32383195 (-)
AMCG00016849 NA coding downstream 172346 32304650 ~ 32325161 (-)
AMCG00016846 NA coding downstream 213467 32269963 ~ 32284040 (-)
AMCG00016858 wnk4b,LOC107754305,LOC107582920,LOC107585056,LOC107740640,LOC107683678,LOC108429078 coding upstream 1030 32508349 ~ 32533759 (-)
AMCG00016857 wnk4,LOC108257086,LOC108429078,LOC105912834 coding upstream 38300 32545619 ~ 32546814 (-)
AMCG00016862 NA coding upstream 76700 32584019 ~ 32590534 (-)
AMCG00016864 NA coding upstream 166998 32674317 ~ 32692351 (-)
AMCG00016867 NA coding upstream 355927 32863246 ~ 32871525 (-)
G16250 NA non-coding downstream 60824 32434236 ~ 32436683 (-)
G16249 NA non-coding downstream 69427 32427852 ~ 32428080 (-)
G16248 NA non-coding downstream 71551 32425716 ~ 32425956 (-)
G16245 NA non-coding downstream 81063 32416191 ~ 32416444 (-)
G16244 NA non-coding downstream 104127 32393142 ~ 32393380 (-)
G16292 NA non-coding upstream 347462 32854781 ~ 32857465 (-)
G16293 NA non-coding upstream 351922 32859241 ~ 32861597 (-)
G16325 NA non-coding upstream 476935 32984254 ~ 32984464 (-)
G16375 NA non-coding upstream 748334 33255653 ~ 33256382 (-)
G16377 NA non-coding upstream 776695 33284014 ~ 33284227 (-)
G16247 NA other downstream 74069 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 229539 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 1109239 31380547 ~ 31388268 (-)
G15787 NA other downstream 1968007 30526292 ~ 30529500 (-)
G15706 NA other downstream 2295156 30201459 ~ 30202351 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other upstream 668757 33176076 ~ 33178883 (-)
AMCG00016889 LOC107570748,LOC106906011 other upstream 884470 33391789 ~ 33434651 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 981406 33488725 ~ 33513579 (-)
G16563 NA other upstream 1599371 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 2888673 35395992 ~ 35399030 (-)

Expression


Co-expression Network