AMCG00016889 (LOC107570748,LOC106906011)


Basic Information

Item Value
gene id AMCG00016889
gene name LOC107570748,LOC106906011
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33391789 ~ 33434651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016889
ATGCAGATAAGAGCCGCGAGCAGCATGAGCATGAACATGGAAAGCCAACGGGCAGTATCCTCCTACCGAAAGAGGTTCGGCGGTTCATCTGGCTCTGGGAGGACTTCTCTCTCCGCAGGACGCTACTCCCTCCACAGCTCCCCCCGGGTGCCCTACGTCTCCCACACCACCACCCGCCGCAGTGGCCCGGTCCTCCAGACGTCCTTCACCCCGGACAAGCTGGACTTCTCCATGGACAACGTGCTCAAGGCCCAGTACAAGGAGACGCGCACCAACGAGAAGGTGGAGATGATGGAGCTCAACGACCGCTTCGCCAGCTACATTGAGAAGGTGCGCTTCCTGGAGCAGCAGAACAAGGTCCTGGTGGCCGAGCTCAACCAGCTGCGAGGGAAGGAGCCCACCCGCCTGGGAGACATCTACCAGGAGGAGCTGCGGGAGCTGCGCCGCCAAGACGAGATCAACTTGCGCCTTGAAGCCGAAAACAACCTGAACTCCTACAGACAGGCAAGTGATGTAGACGAGGCAGCTATGAACCGTGTACAGCTGGAGAGAAAGATTGACGGGCTCCAGGATGAGATTAACTTCCTCAAGAAGATCCACGAAGAGGAGCTGCGTGAGTTCCAGGAGCAGGTGGTGGCTCAACAAGTCCATGTAGACATGGACATGTCCAAACCGGACCTGACTGCTGCGCTCCGAGACATCCGCATCCAGTACGAATCCATGGCCACTTCCAACATGCAGGAGACCGAGGAGTGGTACCGCTCCAAGTTTTCTGATCTGACCGACGCAGCCAATCGGAATGGCGAAGCCCTGCGACAGGCAAAACAGGAGGCCAACGAGTACCGCCGTCAGATCCAGGTGCTGACCTGTGACCTGGAAGCTCTACGTGGAACTAATGAGTCCATGGAAAGGCAGATGCGGGAGATGGAGGAGCGTTTTGCCCAGGAGACCGCCAACTACCAGGACACCGTGGGGCGGCTGGAGGATGAAATCCAAAACCTGAAGGAGGAGATGGCGCGTCATCTGCAGGAGTATCAAGACCTGCTCAATGTCAAACTGGCCCTGGACATCGAGATCGCCACCTACAGGAAGCTGCTGGAGGGCGAGGAGAGCCGGATCACTGTTCCCGTACAGAGCTTCTCCACTCTTCAGATGAGAGAGACCAGCCTGGACACAAAACTGTCTCCTGAGTCTCACGTGAAGAGAAGCATTTTGGTTAAAACGGTGGAGACGAGAGATGGGGAGCTACAGAAACAGGCCACCCTAGGAGGTCTTCAgcCAATCAAGTGGGTGTTGTTCTGA
>TU20415
CGGGGGGAAAATGACATATTTACGGTCTCCTAGTTCCCACTCAAACTACTACAACAAGCATTTTGGATAGACTGACAAAGAGCTTCACATTGGGCCGAGAGTGTGGGGGTTGGCAGACTGTCAAGAAGCCAAATGGAAATGAACAGCAAGGAGGTTCCGTTCGAGAAGAGGAGGCTGTCTTTTCACCCAGGGACTCTGGAGTTGAGGAACAAAACTGCCGGCTCTCCACTGATCCTTTCAAATGAGGACTTGCTCTGGATCAGTACCTTACTAGCAACCAGACACTCCCGCTTGCCTAAGTGAGAGAAAGTCAGGAGAGTTTTTGAACTCAGTGATGAGCACAATTACTGGCGAGCGCAAGCATCGCACTGCCCTCCATCACCCCCCCCCTCTGCTCTGGGGTGGTCCTTCTCTATAAAAGGCTGAGAGGCACAGTGTCGCCTTCATTTGTGGAACTTTCCCCCTTCCCTCCTGAGCCTAGCGAGCAGCATGAGCATGAACATGGAAAGCCAACGGGCAGTATCCTCCTACCGAAAGAGGTTCGGCGGTTCATCTGGCTCTGGGAGGACTTCTCTCTCCGCAGGACGCTACTCCCTCCACAGCTCCCCCCGGGTGCCCTACGTCTCCCACACCACCACCCGCCGCAGTGGCCCGGTCCTCCAGACGTCCTTCACCCCGGACAAGCTGGACTTCTCCATGGACAACGTGCTCAAGGCCCAGTACAAGGAGACGCGCACCAACGAGAAGGTGGAGATGATGGAGCTCAACGACCGCTTCGCCAGCTACATTGAGAAGGTGCGCTTCCTGGAGCAGCAGAACAAGGTCCTGGTGGCCGAGCTCAACCAGCTGCGAGGGAAGGAGCCCACCCGCCTGGGAGACATCTACCAGGAGGAGCTGCGGGAGCTGCGCCGCCAAGTGGACCAGCTGAGCACCAGCCGCGCCAGGATGGAGATCGAGA

Function

NR:

description
PREDICTED: glial fibrillary acidic protein-like

GO:

id name namespace
GO:0045098 type III intermediate filament cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05640 GFAP; glial fibrillary acidic protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016889 True 1302 mRNA 0.57 11 33391789 33434651
TU20415 False 958 TUCP 0.57 2 33426488 33431085

Neighbor

gene id symbol gene type direction distance location
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding downstream 1034 33381884 ~ 33390755 (-)
AMCG00016888 NA coding downstream 43727 33333462 ~ 33348062 (-)
AMCG00016884 ccdc47,LOC107674171,LOC107658463,LOC107729550,LOC107721963 coding downstream 73207 33307741 ~ 33318582 (-)
AMCG00016879 NA coding downstream 196533 33191702 ~ 33195256 (-)
AMCG00016877 pus3 coding downstream 219856 33168630 ~ 33171933 (-)
AMCG00016893 map3k3,LOC102777599 coding upstream 4901 33439552 ~ 33473811 (-)
AMCG00016894 NA coding upstream 39359 33474010 ~ 33479455 (-)
AMCG00016895 NA coding upstream 78976 33513627 ~ 33520074 (-)
AMCG00016892 ddx42 coding upstream 119450 33554101 ~ 33575296 (-)
AMCG00016904 LOC107583088 coding upstream 148073 33582724 ~ 33596242 (-)
G16422 NA non-coding downstream 63448 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 99540 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 107562 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 135407 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 407325 32984254 ~ 32984464 (-)
G16502 NA non-coding upstream 193449 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 199476 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 206547 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 208327 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 209558 33644209 ~ 33648440 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 212906 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 884470 32497507 ~ 32507319 (-)
G16247 NA other downstream 968351 32423058 ~ 32423438 (-)
AMCG00016847 NA other downstream 1123821 32261549 ~ 32267968 (-)
AMCG00016815 NA other downstream 2003521 31380547 ~ 31388268 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other upstream 54074 33488725 ~ 33513579 (-)
G16563 NA other upstream 672039 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1961341 35395992 ~ 35399030 (-)
G17032 NA other upstream 4323506 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4440599 37875250 ~ 38058939 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_026463 gfap coding NC_007114.7 CM002887.2 31792441 ~ 31804481 (-)