AMCG00016890


Basic Information

Item Value
gene id AMCG00016890
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33523888 ~ 33548644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016890
ATGCTGCTTGTGAGCAGGATTCTCCTGGTGGTTCTGTGTTCCCTTCCAAGACCTGTCTACACACTGGTGGACGCCGATGATGTCTTCACCAAGGAAGAGCAGATCTACCTGCTCATGAAGGCCAAGAGCAAGTGTGAGACTCGGATCGCGGCCGAGATAGACAAGGTCAAAGatgacTCCTGTATGCCACAATGGGATGGCATCACCTGCTGGCCCAAAGGAGCCCCAAATGAGTTGGTGTCAGTTCTCTGCCCGGACTACATCTACGACTTCAATCACAGAGGCCATGTCTATCGTCAGTGTGACATGTTTGGAAACTGGGAGCAGGTTCCTAGTTTAAACCGGACCTGGGCCAACTACACCGAGTGCTCCACTTTCCTGCTCTCCAATAGCAGGAACGAGGAAGAGCTGAAATGTGTCTTGCCCCCACCCCGCACCCAACCTTCCCCCCCCAACTCCTGTAGGCGACTGCACTGCACCAGGAACTACATCCACATCCACCTCTTCATGTCGTTCATGTGTCGTGCAGTCAGCATCTTCGTGAAGGACGCAGTGCTCTACTCAGTGTCCGAGGACCTCACCAAGACTGAGGATGACAACATGAGAACTGACCTGGGGCCCAGTCCCGCACCTAGGCCCCACATGGTGGGCTGTAAGGTGGTGGTGACTCTGTTCCTCTATTTCTTGGCCACCAATCACTACTGGATTCTTGTGGAGGGGCTTTACCTACACAGTCTCATCTTCATGGCTTTCCTGTCCGATAAGAACTACCTGTGGGCGCTGACGGTCATTGGCTGGGGGGTCCCTGCTGTGTTCGTGTCCGTGTGGGTaaatttctttctcttcctcaaCATCGTTCGGGTGCTGGCCTCCAAACTGTGGGAAACTAACACCGGAAAACTGGACCCTAGGCAGCAGTACAGGTGGAAGCTGCTGAAATCTACGCTGGTCCTGATGCCGTTGTTCGGTGTGCACTACATGTTGTTCATGGCTTTGCCCTATACCGAGGTGACGGGCCTGCTGTGGCAGATACAGATGCACTACGAGATGATCTTCAACTCATCCCAGGGGTTCTTCGTTGCATTCATCTACTGCTTCTGCAATGGGGAGGTCCAGGCAGAGATCAAGAAGGCGTGGCTGAGGAGGAGCTTGGCACTGGACCTGAAGCAGAAGACCAGGGTGACCAGCAGTGGGGGCAGCTGCTACTATGGAGGCATGATCTCCCAAGCCACCAACAGCGTCACCGTGAGCGTGGCTGTCTCCAAGGGGTTGCCTCTGAGTGGCCGCCACCGTGTCCTGCCCCTCGCCAACCTGCCCGGCTACATCCCCAGTGGCTCCGAGATCTCCCTGCCCTCCCCTGGCCCAGACCAGGCTGGTAGGAAGGTGGGAAAGGGGGCTGTGCCAGAGCAGCCCATCAACCACAAGAGGGGTAAGGAGCTGAGGGAGGCAGGCCTCTCTGACGACGAGGACCCTGGTTCCTCTCCCTCCATCAAGGGCGTCGCGACCATTCTGTGA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016890 True 1515 mRNA 0.56 11 33523888 33548644

Neighbor

gene id symbol gene type direction distance location
AMCG00016882 NA coding upstream 221975 33293053 ~ 33301913 (+)
AMCG00016883 NA coding upstream 231297 33256225 ~ 33292591 (+)
AMCG00016881 NA coding upstream 279405 33221534 ~ 33244483 (+)
AMCG00016886 NA coding upstream 302604 33207472 ~ 33221284 (+)
AMCG00016885 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 coding upstream 345956 33176271 ~ 33177932 (+)
AMCG00016900 strada coding downstream 20768 33569412 ~ 33580105 (+)
AMCG00016903 NA coding downstream 31665 33580309 ~ 33597112 (+)
AMCG00016899 NA coding downstream 48518 33597162 ~ 33617484 (+)
AMCG00016896 NA coding downstream 70648 33619292 ~ 33624535 (+)
AMCG00016902 NA coding downstream 77332 33625976 ~ 33628289 (+)
G16395 NA non-coding upstream 195546 33325094 ~ 33328342 (+)
G16351 NA non-coding upstream 343449 33180239 ~ 33180439 (+)
G16350 NA non-coding upstream 343948 33179705 ~ 33179940 (+)
G16323 NA non-coding upstream 541558 32981779 ~ 32982330 (+)
G16290 NA non-coding upstream 664872 32857551 ~ 32859016 (+)
G16512 NA non-coding downstream 102437 33651081 ~ 33651289 (+)
G16542 NA non-coding downstream 444538 33993182 ~ 33995382 (+)
G16552 NA non-coding downstream 555812 34104456 ~ 34105687 (+)
G16646 NA non-coding downstream 1049178 34597822 ~ 34599917 (+)
G16668 NA non-coding downstream 1187693 34736337 ~ 34736549 (+)
AMCG00016880 dcaf7,LOC100702343,LOC105030232,LOC105898766 other upstream 190142 33320144 ~ 33333746 (+)
G16289 NA other upstream 666448 32856361 ~ 32857440 (+)
AMCG00016854 NA other upstream 1020516 32499056 ~ 32503372 (+)
AMCG00016841 NA other upstream 1263261 32251808 ~ 32260627 (+)
AMCG00016830 NA other upstream 1772775 31728556 ~ 31751113 (+)
AMCG00016898 NA other downstream 81368 33630012 ~ 33650080 (+)
AMCG00016901 NA other downstream 119949 33668593 ~ 33674361 (+)
G16546 NA other downstream 498727 34047371 ~ 34047720 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other downstream 544632 34093276 ~ 34099596 (+)
G16550 NA other downstream 551671 34100315 ~ 34100863 (+)

Expression


Co-expression Network