AMCG00016892 (ddx42)


Basic Information

Item Value
gene id AMCG00016892
gene name ddx42
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 33554101 ~ 33575296 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016892
ATGGTGCCGCCACCGCCACCGCCACCACCACATTACAGAAGACATACAGCATCCCTGATTAACACCATAGCCATGAACTGGAATAAAGGTGGCCCAGGGGGCAAGCGTGGCTTTGGATTTGGTGGGTTCAGCCTGGCTACTGGCAAGAAGGAGGAACCCAAGTTGCCACAGCAGTCCCACTCAGCGTTTGGCGCTCCCGGCACAGCAGGGGGGTATGGCAAAGGCCAGCAGCTCCCCGCCTTCTACAAAATCGGCTCCAAGAGGGCCAACTTCGATGAGGAGAACGCGTACTTTGAAGATGATGAAGAGGAATCTGGCAGCATGGATCTGCCTTATATCCCAGCGGAGAACTCTCCTACTCGTCAACAGTTCCAGTCTAAAGGAGGGGGCTCGGATAGCGAGGAGGACCCCCTGGACGCTTTCATGGCTGAGGTGGAGGACCAGGCAGCCAAAGATATGCGAAAACTGGAAGAAAAggataaagagaagaaaaacacaaaGGGTATTCGAGATGACATTGAAGAGGAAGATGACCAAGAGGCCTATTTCCGGTACATGGCGGAGAACCCCACAGCCGGTGTGAccacggaggaggaggaggacaacATCGACTACCCACCCTTCGAGAAGAACTTCTACAATGAACACGAGGAGCTCCACATCCTGACCCCCATCCAGGTGGTGGAGCTGCGACAGAAGCTAAACCTGCGGGTCTCTGGTGCTGCCCCTCCCAAGCCCTGTACCAGCTTTGCCCACTTTGGATTTGATGAGCAGCTGATGCACCAGATCCGCAAGTCAGAGTACACGCAGCCCACGCCCATCCAGTGCCAGGGAGTTCCCATCGCTCTGAGCGGCAGAGATATGATCGGCATCGCCAAGACCGGCAGCGGGAAGACTGCGGCCTTCATCTGGCCAATGCTGGTTCACATTATGGACCAGAAGGAGTTGGAGACGGGAGAAGGGCCCATCGCAATCATCGTGTGTCCCACCAGGGAGCTGTGTCAGCAGATCCACACGGAGTGCAAGCGCTTTGGAAAGGCCTATAACCTGCGCTCTGTGGCGGTGTATGGAGGGGGCAGCATGTGGGAGCAGGCCAAAGCGCTCCAGGATGGGGCTGAGATTGTGGTCTGCACTCCGGGGCGTCTAATTGACCACGTGAAGAAGAAGGCCACAACATTGCAGAGAGTCACATACCTGGTGTTTGACGAGGCAGACCGCATGTTTGATATGGGATTCGagTATCAGGTCCGGTCCATTGCTGGTCACGTCCGCCCTGACAGACAGACTCTTCTGTTCAGCGCAACTTTCCGCAAGAAGATCGAGAAGTTGGCTCGGGACATCCTGGTCGACCCCATCCGCGTTGTGCAGGGTGACATCGGAGAGGCCAACGAGGATGTGACCCAGCTGGTGGAGATCCTGCCCAGTGCTCTGGAGAAGTGGGGCTGGCTGACCCGTCGCCTGGTGGAGTTCACCTCCATGGGCTCCGTCCTCATTTTCGTCACCAAGAAGGCAAACTCCGAGGAGCTGGCCACCAACCTGGGCCTGGAGGACCATACCGTGGGGCTGCTGCACGGAGACATGGACCAGAGTGAGAGGAACAAGGTCATCGCGGACTTCAAAAAGAAGGCGCTGCCCATCTTGGTGGCCACCGATGTGGCCGCTCGTGGCCTGGACATTCCCTCGATTAAGACCGTGGTTAATTACGACGTGGCCCGGGACATCGACACGCACACTCACCGGATTGGGCGCACAGGACGAGCCGGGGAGAAGGGTGTGGCTTACACCCTGCTCACCCACAAGGACACCAACTTCGCCGGCGACCTAGTGCGCAACCTGGAGGGAGCCAATCAGATGGTCTCTAAAGACCTCATGGACCTGGCCATGCAGAATCCATGGTTCAGGAAGTCTCGATTTAAAGGAGGCAAAGGGAAGAAGCTGAATATTGGAGGCGGGGGCCTGGGGTACCGAGAGAGGCCGGGGCTGGGAGCAGACACCTCCGTGAGCATCTCTGCAGGACATGAGGAGCACGGTGGCGGTGCTGTAATGTGTAACTATGAGGCTTACAGACCATCCTCGGGCGCCATGGGAGACCGGATGTCCGCCATGAAAGCAGCTTTCCAGgctCAGTACAAAAACCACTTTGTGGCTGCATCTGGCTTTCCCCCCAAGTTGACCAACACGTCCAGCAGCACTTCGGGCTGGACCAGCGCAGGCAGCCTGAGCTCGGTGCCCACAGGAGGGCCCCAGGCTTCGGCCGGCCAGGAGGGGCTGAAGTCGGCACCGCCCCCGGGGCCTGCTCCCCCAGTGCTGAGCATGGGGACCAAGATGCCAGGCTTTGCCAGTGCTGGGGCTCTGAGCTCTTTGTCCGACAGCTACGCCAACCTGCCACAGGGCtaccctctcccctctcccctcacaCCCCGAGATGTTGCCAAAGATCGGCATGGGGAAGCCAGAGGGCGATTTGGGGACAGCCACTATCGCCATGGAGACCGAGACCGTTATGCGGAACGGGAGCGCTATGGAGAGCGAGAGCGCCACGGTGACCGGGATCGCCACGGAGACAGGGAGCGCTATGCAGACCGGGAGCGCTACGGCAGCGGGCGCCACGGAGATGCCCGCAACGGGGAGGGCAGGGAGAGGATGGCAGAAATCAGAGGGGAGAAAGCTGAAGAGAGCTTTGCCGTCCCTGATCCCCCCAAGCGCAAGAAGAGCAGGTGGGACAATTGAAGTGGCTCCAGATTTCCTGgggaaaaacaataaagcacGTGCAGATCATATACCGACAGCCTGGCCATTTATTAGGGATAAATAACTgttaaaacaattagaaaatattcaaagcttttaaaaaatataaaaaaaattgggaAAATCTCTAATGATACTTTGGAATAATATGGGACCTGATCACATGACACTTGGGAgatgttgtgtctgtgtgtagaaGACGGTAGAGTGCAGGACAGGTTCTGGCTGAAGCCTCTCTGCGCTGTGCTTTGCTTGCCTTGAGGTTAGTCCAGGTCTGCTGCTTACCTGCGCCTTGGACTGACCCTTCACTCTCCCTGACCGCTCACCCCAAGGTCGGACCAGGAAAAGGGCTGGGAGTGTCACCCTGTGTAAAGCTAAGGGAAAGTGTGAAGTGAGACGGTTACAATGTATTCAACTGCCCCTAATGAAGTGGCTGGACAGTATGTATGTGTCACAAAAAACAGCTGAATGAAATTAaggattgattttgtttgttggatttttttttttattcaaatacttttctttgtgtgtgtgtggatctgCTACAATGTTAACAATTTAGTTATACAGTGATGTGTTGAAAATTTTAAACTGGACATTttagggtttgtttgtttgtttattttgctgcgTAGGATCCCAAGTCTgttctgaaattgtattttgttaagtTCCAGGGAGTGGAGTGGGCTCTTGGGCTGTTGAATGTGGCTAGACTTATAGGATATATCCAAAGAAACCGTGAAGGAAATGGATGCAGCTGGTTTAGTAACTGCACCAAGCAGCCCGAGCCCAGTGCCCCGCTTTActctcttatttaaaaaaagaaaagaaaatcaaattgaaattttagttctttattaatatttctgatACAAGGGTCTTGGGTCTTCTTGCCATGGCAAGTACCGTGTCATGCAACAGAGTTGCAGAGTGAAAGTGCGGTCACTTAAAGTCTTGCACGGCCATGAAAAGTGAAATCTCATTTTAAACCATGCTGGGGGTATTAACTACTCTACCCGCCAATTTGGGCTGAAATAGCAGGGAGTGTCTATGACCTTTATTGAACAGCACACCAAGTCGATTTCTTGTGgaaccatttttattaaaataaaacttcagaTGCGTATAATAAGAGGGATCATTGAAACGCAATCCACACTAATATAGCCTTTATAAAAATGTGACCTCATAAAGTTATTTTAGTCTGTTAACTGCCCCAGTTGTCCCCCCCGTTGTACAGGCTGTTGCCGAGTACAGATATAAGTGACTTCCTCTGAGAATCTAAACCCACATCAGTTGCCTGTTCAGATGGGCCCTTTCCTTTTTGAATTGTAGCCTCTTCCGTCTTCTGCTACATGCTGATCACTGTGTGGAAGTAAATTGGTGCTTCTGAGTGGTTCACCTCGAATTAGCCTCACTTGGGAGTAGAAACATAGATCTAATAGCCTGGAGACACCTGCTGGCAAATCCCGCCTCTGCTACTTGATGACTTTTGCCAGAGTAAATAGTTTACCACTCCAGGGTTGAGTAGAGCAGTTTAAGGGAAATTAATTTTGGTCTGTCCTTGAGATCCTTCAAGACTGGATATTGGTAATACTATGAATGTATACTATTGGTAATCCATAGTAGGTGTCAGTCATGTGATATAAAATCAGACCACTCAGAAatcatccttttttatttttgaaagctctCTTTTCCATAACCCTTATGAAGAGTGCTGACTGACCCAAacaatgtgacttttttttgcCTCAACTCCTGCTGGCCCATTTCGCATCTGGGTGTCTGGGTCTGAGTAGAGTTGATCTGCTTTGAATGAAGCAaggatgtgtttgtttataagcCTACAAAATGACTATCTTTCAACATTGGTACCAAgaaatatttttaagtatcTAGTAGTTTACAGTTGACTGAAAAACAGAATCCAAAAAAACCCACCTGCAGCACCGATTAAAATCACGCTTCAAAGCTTTCATATAAGACATTCTCTAAATAATTAAAGCACATTTGCATTTGGGACTTGGAAATGTGCCATTTGTAGGAACAAGAACAGTTATGCTATATTTTCAACTTGTTTCTGACTGGGGAAAAAGTCTCGGATTTCTACAGTCCTGTGTCTCGTCCTTTAGTAATACtgtcttttcaaaatgtatatatttaaagtaggATTAATGACTGT

Function

symbol description
ddx42 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleus. Orthologous to human DDX42 (DEAD-box helicase 42).

NR:

description
Ddx42 protein, partial

GO: NA

KEGG:

id description
K12835 DDX42, SF3B125; ATP-dependent RNA helicase DDX42

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016892 True 4942 mRNA 0.50 19 33554101 33575296

Neighbor

gene id symbol gene type direction distance location
AMCG00016895 NA coding downstream 34027 33513627 ~ 33520074 (-)
AMCG00016894 NA coding downstream 74646 33474010 ~ 33479455 (-)
AMCG00016893 map3k3,LOC102777599 coding downstream 80290 33439552 ~ 33473811 (-)
AMCG00016887 kcnh6a,LOC106601567,LOC105012970,LOC108427397,LOC106527280 coding downstream 163346 33381884 ~ 33390755 (-)
AMCG00016888 NA coding downstream 206039 33333462 ~ 33348062 (-)
AMCG00016904 LOC107583088 coding upstream 7428 33582724 ~ 33596242 (-)
AMCG00016907 nxph3,LOC105012985,LOC105898539,LOC107092790,LOC106601594 coding upstream 301807 33877103 ~ 33880678 (-)
AMCG00016908 NA coding upstream 425301 34000597 ~ 34008800 (-)
AMCG00016911 LOC105028465,LOC108426558,LOC107655803,LOC107557242 coding upstream 639603 34214899 ~ 34263010 (-)
AMCG00016931 NA coding upstream 1516157 35091453 ~ 35096502 (-)
G16422 NA non-coding downstream 225760 33325086 ~ 33328341 (-)
G16378 NA non-coding downstream 261852 33292031 ~ 33292249 (-)
G16377 NA non-coding downstream 269874 33284014 ~ 33284227 (-)
G16375 NA non-coding downstream 297719 33255653 ~ 33256382 (-)
G16325 NA non-coding downstream 569637 32984254 ~ 32984464 (-)
G16502 NA non-coding upstream 52804 33628100 ~ 33628919 (-)
G16505 NA non-coding upstream 58831 33634127 ~ 33634339 (-)
G16509 NA non-coding upstream 65902 33641198 ~ 33641979 (-)
G16510 NA non-coding upstream 67682 33642978 ~ 33643661 (-)
G16511 NA non-coding upstream 68913 33644209 ~ 33648440 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 40522 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 119450 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 375218 33176076 ~ 33178883 (-)
AMCG00016859 NA other downstream 1046782 32497507 ~ 32507319 (-)
G16247 NA other downstream 1130663 32423058 ~ 32423438 (-)
G16563 NA other upstream 531394 34106690 ~ 34107941 (-)
AMCG00016938 NA other upstream 1820696 35395992 ~ 35399030 (-)
G17032 NA other upstream 4182861 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 4299954 37875250 ~ 38058939 (-)
G17421 NA other upstream 7641355 41216651 ~ 41217231 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_03444473_03455791 NA coding CI01000069 null 3444392 ~ 3457756 (-)