AMCG00016926


Basic Information

Item Value
gene id AMCG00016926
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35010365 ~ 35014666 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016926
TCCACCTGTAACTGATTCTTTATAGTAACTAAGACATAACTCCCCAAGCGTTTTTTTAGAAGATTCTAGGTTTTATAAACATATTCATCCTTTGTTTAAATGCTTCTAAAATAAGTTTACAGCAATTGGGAAATAGCTATAATTTTCTTAGGGAGGTAAGACCATGTTCTGAAAAACTGTAAGAATGTAACTGTCACGAggtgttaattttattgtaGCATATCAGGGATGTTTTTCAGTAGTAATCATAGTATACACTGTTAGATCTGGTGTTCCCTTTTAATGGTAAAAGTTGAATATTCTTTAATTTACTGTGAATCTTTGAGCCCAGATCCCTGAAATAGAAAtggcacaatatatatttttaaatcatcaaatAAGTAGCCTTTTGGTAGAGTTATACTGTTGGAATCTATACTGAATTTTAACCTTGGACATTTCAAACCCTGATGCTGCTTTGAGATGCATTGCCGGTGCTTCGATTGTGAAGGGAGGTGTTCAGAGAGAGCTCTGTGGGGACAGTGTTTGTAGCGTTAGTGTTCTTTGGTTTGGCTGCAGAAGACATTGAACCTGACAAAGCTGCTAGGGTAGGGCATCGCTTTCCTGCGGGGTCTTTGTCGTTTTCACAGGGTTGgaagcaagaaaaaaacattaaatagcCTGCAGGCTGCTTGCGACGCTGTCAGTGAGTTGGCAATGACTCTGCTCTCTTGTGTAAATTTGTTCTGTTGTGTTAAAGTAAAATTATAAGCTGTCATGCTATAAATGCAAGATTTGTTCTTTCAGTGGTGTTTCATAGTGAATCAGAgagaatttttgtttttaaatactcaCACTGTATCATAAGTATGAAGATACATTATGTTGCAGACAAACAGATGTTTCATACCATCAGCTCATGGGTGCAGCACTCTTATTAGACGCCACCTTAGTGTGTCCCCTCATTAATTCGTCTACCATTCTCTCTTCCCTTTTTCCCAGTGTAGTCATGATGCGGTAACAGTCAACAGCTAAGATGAATGTGTTCAAGGTTCTGGGGAGGATGTTTTCAGTGTGGGGCTGGTAAATAACCTTTATTCCCGAACCCACTGCCCTTCCCCCACTCCCCATGCCCTCCCGCCCCGCACCGCTCAACCCCTGAGGAGAGTAATGCCACGGCCGGGAAAGAAACCAGCAGGGGAGGCGTCGAACTCCAACAAGAAATGCAAGCGCTACTTCAACGAGCAGTGGAAGGGCGAATTCCCCTGGCTGGAGTTCGACTACGACAGAAAGCTGATGTTCTGTGTGGTGTGCCGGCAGGCGCTGGTGAAAAACAAGCACGGCAAAGCGGACAACGCCTTCACCGTCGGCACCGACAACTTCCAGCGCCATGCCCTGCTGCGCCACGTCACCTCTGGTGCTCACCGCCATGCCCTGGACGCCACTCGGGAGACAGCCGCCTGGGGCCCCCTGACCCCCACCAATGAGGAGGACCTGAAGTCACCAGTCAGGAGGGAGATCAGCCCGGCCAAAATCGCCATCCTCACCACTATCTATTGGATGGCCAAGGAAGACATTCCAGATTCTAAACTCCATTCACTGTTGGAGTTGCAGAAGTACAACCTTTGCCAGTCTTTATTGACCGGGGAACACCACGAGTATTACACAGCCCACAATGTAAAGGAAATGCAGGAGGCAATTGCAATGGTTCTTCATGATGAAGGTAGGCGCAGAATGACTGATTCCCCATTTATCGGGCTGGTTGTGAAAGAAACTGTTGACATTCCTGAACACAAAAAGCTAGTGCTGTTTGCAACCACAGTGTCCCCCTACGACGGGCAGGCGTCAGTTATATTTCTTGGCCATTTTGACCTTCCGGATGGAGAAACTCAGACCGTAGTAGACAGACTTGTAGAAATCATGAACAGCTCTAGCATCCCTTTGTCTAAAGTCCCATGGCTCGCCTCAGATGGAATGAGTGTGAGTTCAGACAAGATCTGCAGCATTGAGTCAAGTCTTAAACCCTTGTGTCCGCTTCTAAAACATTTCCATTGGTATTCTCAAAACAACTGGCTCGCTTTGGCTGGTGACATCCTGGACATTGTCTATGTTAGGAAGTATGAGGAAGCTGTAGACGCTCTCTTTAATCTTTTTTCCAGTTTGGAGGATGAGAATAACAGCTTAGGAGAACTGGAGACAGTCCTGAAGTCCTGCCAGATCCACCTCAAGGACTCCGGGCCTGTGCGATGGACCTCAGTTTTGTCAGCAGTGGAAGCGATCAACTCCCTGTGGCCTACCCTGGTGTTGCTCCTGGAGGGGGAGGCTGGGAAATCTCCCCTGGCCTTGGGGCTCTGTGAGGAACTCAAGAAGTTCCAGTTTGTGGCTCTCACCAAAGTGCTGCTGGACATCTTGCCGGTCCTCCAGAAGCTGGGCCAATTCTTCCAAGCTGAGGAGGTGGACCTCTCCACCTTCAAACCCCTAATTTCAGCCACATTGGCCTGCCTGAGGGATCTGAGAGACACCAATGGGCAGCACTTCCAGCAGTTCCTCAGTGAGATGAACGAGCACCCTCTGGAAGACAGCGAGACCGACTGCCGACTCTACTATAAGGGAGTTGAATTGACCCACTGCTCCAAAGAGCACTTACAATCCTTTGGGCAGCTGAAGGAAGCCTACCTGGACCAGCTGTGCGAGAGTCTCCAAGACAAGCTGCCCGAGGAGATGGTGGAGGTCACCAATGCCTTTGCAGTTCTCTTCAGCCCCCTGTGTTACTTACAGGTGCTGGAAGACATCATGAGCTACGGGCTGATGGAGCTCACCCTACTCCTAGATCACTATGGGCATCTGGTGAGTCAGGAGAGGGCGAGGAGGGACTTCCCCCTCTTCAAGCGCATCGTCGTCAGTCTCGGCCACCTTCCACTAAGGGAGCTCTGTGTCCAACTGGTGCTCCTCGACTCTGAGATGCACGAGCTCTTTCCTGACTTTGCCACCCTGGCTTCCATAGCCTTGGTTTTGCCTCTGAACTCTGCCACGCGTGCAAAGGTTTGTAGGGCCGGAGATCAGACAAAAAGACTACTGAGGAAAGAGAGCTGGCGAAATATAAAGATTGTGGTGGATGGTCCAACGATCAACGAGTTTGATTTTGAAGCTGCCATTGACCATTTTGAAACAATGAAAGACAAACAGATTGTCTTCTGATGAATGTTTTGCTCATTTatccttgttgtttttgttcaaactACAAAATGACACCAAATattaattaagcaaacaaataaaatgctgttcATTTTATTGGGTGTCCCACAGTTATCAGAATCTGTTTGCTGAATGTCTTGATACTAAGCACCTATACTGTCACTATTGTCTTCTTTCACTTCCTCAATCATTTATTAAGGGGAATATGTCAGGCAGGTGTTTATAGAGTATTAAGTCTGATCCAATGTGAAATCCTACATAGCCTTCTAATTCCAGATAAACTCTCAGTTagtttttgaaataattattggcTTGTTCTCCTATAACTGTCTGTATAACTGTCTGtcttaattttagtttttctctcctccatgcctaatggtttatttatt

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016926 True 3569 mRNA 0.46 2 35010365 35014666

Neighbor

gene id symbol gene type direction distance location
AMCG00016925 NA coding upstream 83034 34924190 ~ 34927331 (+)
AMCG00016923 NA coding upstream 236726 34761492 ~ 34773639 (+)
AMCG00016922 kat2a coding upstream 253364 34727405 ~ 34757001 (+)
AMCG00016924 NA coding upstream 282982 34708297 ~ 34727383 (+)
AMCG00016920 NA coding upstream 311960 34679512 ~ 34698405 (+)
AMCG00016927 NA coding downstream 19149 35033815 ~ 35081248 (+)
AMCG00016928 dnajc7,LOC106607285 coding downstream 82924 35097590 ~ 35116668 (+)
AMCG00016930 NA coding downstream 107281 35121947 ~ 35131005 (+)
AMCG00016929 NA coding downstream 122883 35137549 ~ 35141789 (+)
AMCG00016932 klhl11,LOC107097235,LOC103373141 coding downstream 191214 35205880 ~ 35212613 (+)
G16698 NA non-coding upstream 188952 34821197 ~ 34821413 (+)
G16692 NA non-coding upstream 233318 34775825 ~ 34777047 (+)
G16668 NA non-coding upstream 273816 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 410448 34597822 ~ 34599917 (+)
G16552 NA non-coding upstream 904678 34104456 ~ 34105687 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding downstream 76793 35091459 ~ 35094092 (+)
G16728 NA non-coding downstream 169669 35184335 ~ 35234875 (+)
G16731 NA non-coding downstream 226113 35240779 ~ 35241527 (+)
G16771 NA non-coding downstream 248386 35263052 ~ 35265068 (+)
G16775 NA non-coding downstream 255967 35270633 ~ 35275819 (+)
G16550 NA other upstream 909502 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 910769 34093276 ~ 34099596 (+)
G16546 NA other upstream 962645 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1336004 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1360285 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 143931 35158597 ~ 35204232 (+)
G17193 NA other downstream 3481385 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4224407 39239073 ~ 39254490 (+)
G17697 NA other downstream 7376631 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 9111548 44126214 ~ 44137931 (+)

Expression


Co-expression Network