AMCG00016929


Basic Information

Item Value
gene id AMCG00016929
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35137549 ~ 35141789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016929
ATGGACGATCAGCAGCAGCCCCAGCAAGTCCCTGAGGTCCAGCAGGCCACCCCTGTAATGACCGAGggctccctctccttccccttcCTGGAGCATGAAGACACAATGGCCGCCCTCCGCGAGGCCCACACACTATTCATCCTGAGGGGCCTGCCGGGCAGCGGGAAAAGTCTGCTGGCCCAAGCCATTGGGCAGAAGTACCAGGGCTTGTCCAAGATCATCTCGGCTGATGACCGCAAAATTGAGCCAGCTGTGCACTCAGTGTTGCCCGAGGAGTATAAGGGAATGGATGAGGAGACGGACAGCTGCTGCAAAGCTGGAACCCCAGTTATAGTACTTGACGACACCAACCATGACACCGAGCGTCTGGCCCGGCTGTACAACCTGGCTGAGCAGCACGGCTACAGCATCCTCATTGTGGAGCCCAAGACGCCCTGGAAGACTcagctggaggagctgaaaTTGAAGACCCACTGGTCCCTCTCTGAGGCGGTGCTGACCTCTCTGAAGGGCCCCCTGGAGGAGACCCCCCTGCCACTCTTCTATGGCTGGTTCCTCACCAAGAAGTTTACTACCGAGGAGTGCAGTGAGGAGGAAGTCAATCTGGAGCAGTATTTCCACGACATGGGGGTTCTGCACTGCACCACAAAGTTCTGTGACTACGGGAAGGCCGACGGGGCAAAGGAGTACGCTGAGAAAGAGGTTGTGAGAGACGCACTGTGCCATGCTTCTAAACTGAAGCTGTCTGCCTTGTTCGTCACCCCCCGGACGCTGGGGGCCCGCGTGGCGCTTACCGACGAGCAGTTGAAGTTGTGGCCGGCGGATGCGGAGAAGGAGGTGATGCCCGAGCAGGATCTGCCCCTAGGGAGCCGCGCACATGTGACCCTGGGCTGTGCCAAGGGAGTTGAGCCGGTCCAGACGGGGAAAGACCTGCTGGAGTTCGTCAAGCTGGAGAAGGAAGGCAACGAGGGGGAAAAGGTGCAGGATCTGGAGCAGGGGGAGCTGCGCTACTTCGGGAAGGGCATGTGGATGCTGCGCCTGAGCCAGGAAGATGAGCTGCTGGGAGTATTCTCGGGCTTCTACGGCAAGAAGAAAGAGGCTGACAAGGCCGAGGAGGGGGCAGCGGAGAAGAAGccggaggaggagaaggaaggaggggcggagaaggaagagaaaaaagagagCCAGCCAGAGGGGAAGAAGAAATCAAAGTGCACACTACTGTGAAGAGATGGTGTCTGGGGGGGGTCTCACTGCTCACAGCAGGGGGTGCTGTGTGGTTGCAGAgtgtgtgttggtgttggtgtgtgtggtttttagGTGTTCTCCTCTTAATATATTCTTGGGAGGGTGAGGCAAGTATTAAATAGATTGCAGCCTTGGGAACTGCCTTTAGCTCAATAGTTCAGCCAAAGAGGCCTTCAGGACCAGCCTGTGCGCTCCTGCTTAGTCACGGCTGTGATTTAGCTGTAGAAATGAATGGCAGATCTTTCACTTCCCCACTCCGGTTAACATAATGTAGTATTACTATTTTTCCTCTCTTTGTCTGTTCTGTGCTTAGTGCTCAATGAAACGTAGGCCTGAGGGTTCAAACAGCCAATATAATGTTTTCCTTGCGGTGCAGGACTAGGAGGGTGGAATGCACAGTTTTTATATTGATTCAATTCCACAAACCTTGTGTGCActggccatttttttttttgctaaaatattttaaagttgcaCATTTGTCAATGTGGTTTTGTAATGTGAATTCTAATACTGCCTTAATGTTTGAGGTACTTGGTAAATGAGTGAGTTCTGATGTGGCATTCTTTCTCCCCACTTGTGCTGTTTCAGGATACTGTTCTTATTGTGTGCTCTGGTATGGCATTTCATAATTACTCTTGACAGCCCCAGTGTGGGTGTAATTTGTGAGTATTGCAGATGTACATCTTAAAGAGGAGAGTGGGGGGGTGCTGTGTAATCCAACACTATGAAGGTTATCCTTATTGCGTCCTGAAGTTCTGCATTAAACCATTTTCTTAAGGCTCCCCTATGctggtctgtgtgtgagagggcTGATGGTACAGATGTACAGCCCAAAGAGTTGACTTGAGGATGTGCTGTGTGATTTATTGTAGGCGAGTGTAAGCGTTCTATAGATGTCCTTcctattaataaaaaaaaatacaatttaaaaaaagctttgcacatgtatttttctctctctctctctctctctctctctctctccagtaaGGCTGTGTTAGAAAGCTGAATATATGGTGTTTTGGGCAGCAGTAGCATAAATGACACTTGTTAAACCTTGATTGCTGGCGATCCAAAAGCACCTCTTTCTATACTCTCACAGTTGCATTTAACGATTTGTTAGCTGcatttgcacttttgtttttgtcgtCTTTAATAAAGACCAAATTGATTTTCATATGTAGCAGTTTTGTAATTCTGCTTGTTGAGCTCTACCTGTAATGAGGTATTATTTTTGCActaatgtcttttattttaattttttacacttaataaaatgtgctttgctCTA

Function

GO: NA

KEGG:

id description
K01121 CNP; 2',3'-cyclic-nucleotide 3'-phosphodiesterase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016929 True 2542 mRNA 0.49 3 35137549 35141789

Neighbor

gene id symbol gene type direction distance location
AMCG00016930 NA coding upstream 6544 35121947 ~ 35131005 (+)
AMCG00016928 dnajc7,LOC106607285 coding upstream 20881 35097590 ~ 35116668 (+)
AMCG00016927 NA coding upstream 56301 35033815 ~ 35081248 (+)
AMCG00016926 NA coding upstream 122883 35010365 ~ 35014666 (+)
AMCG00016925 NA coding upstream 210218 34924190 ~ 34927331 (+)
AMCG00016932 klhl11,LOC107097235,LOC103373141 coding downstream 64091 35205880 ~ 35212613 (+)
AMCG00016933 NA coding downstream 78773 35220562 ~ 35232529 (+)
AMCG00016935 NA coding downstream 105718 35247507 ~ 35260480 (+)
AMCG00016941 NA coding downstream 411433 35553222 ~ 35555196 (+)
AMCG00016943 NA coding downstream 481561 35623350 ~ 35623650 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding upstream 43457 35091459 ~ 35094092 (+)
G16698 NA non-coding upstream 316136 34821197 ~ 34821413 (+)
G16692 NA non-coding upstream 360502 34775825 ~ 34777047 (+)
G16668 NA non-coding upstream 401000 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 537632 34597822 ~ 34599917 (+)
G16728 NA non-coding downstream 42546 35184335 ~ 35234875 (+)
G16731 NA non-coding downstream 98990 35240779 ~ 35241527 (+)
G16771 NA non-coding downstream 121263 35263052 ~ 35265068 (+)
G16775 NA non-coding downstream 128844 35270633 ~ 35275819 (+)
G16778 NA non-coding downstream 137040 35278829 ~ 35279068 (+)
G16550 NA other upstream 1036686 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 1037953 34093276 ~ 34099596 (+)
G16546 NA other upstream 1089829 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1463188 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1487469 33630012 ~ 33650080 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other downstream 16808 35158597 ~ 35204232 (+)
G17193 NA other downstream 3354262 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4097284 39239073 ~ 39254490 (+)
G17697 NA other downstream 7249508 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 8984425 44126214 ~ 44137931 (+)

Expression


Co-expression Network