AMCG00016934 (acly,aclya,LOC103369716,LOC108273769)


Basic Information

Item Value
gene id AMCG00016934
gene name acly,aclya,LOC103369716,LOC108273769
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 35158597 ~ 35204232 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016934
AATTAGCCTAGAATCTTGCATGCCCAAAAATACTTGACGTTTCATCTTCAAAGCCTTTATCGAGTGTCCTGTTCTTGTCTGCTCCTATAAGGTACTGCAGTGAGCAGCCATGTCGGCCAAAGCCATCTCTGAGCAGACGGGGAAGGAGTTCCTGTACAAGTACATCTGTACCTCAGCCGCTGTGCAGAACCGCTTCAAATACGCCAATGTGACAGCTGAGACCGACTGGGACAGGTTGGCGCAGGACCACCCCTGGCTGCTCACTGAGCACCTGGTTGTGAAGCCGGACCAGCTGATTAAGCGTAGGGGGAAGCTAGGGCTGGTGGGTGTTAACCTGGACCTGCAGGGTGTGAAGGAGTGGCTCAAGCCCAGGCTCAATAGGGAGACCACGGAGGAGGAGTTTTACATATGCATCTACGCCACGCGAGAGGGTGACCACGTGCTGTTCCACCATGAGGGCGGTGTGGATGTGGGTGATGTGGACGCCAAAGCACAGAAGTTCCTGGTGGCCGTAGATGAGAAGCTGACAGAGGACGATGTCAAGAAACACCTGCTGCCGCATGTGTCCGCTGACAAGAAAGATGTGCTGGCCAGCTTCATACTGGGCCTGTTCAACCTGTACGAAGATCTCTACTTCACCTACCTTGAGATCAACCCCCTTGTCGTGACCGGAGAAGGCGTCTTTGTCTTGGACATGGCCGCCAAGATAGATGCCACGGCTGACTACATCTGCAAGGCCAAATGGGGTGACGTGGAGTTCCCCCCACCCTTCGGGAGGGAGGCCTACCCTGAGGAGGCATACATTGCTGATCTAGATGCCAAGAGCGGTGCCAGCTTGAAGCTGACCTTGCTGAACCCTCGTGGGCGGATCTGGACCATGGTGGCTGGTGGGGGGGCCTCTGTTGTGTACAGTGACACTATCTGTGACCTGGGTGGCGTTAACGAGCTGGCTAATTATGGAGAGTATTCCGGGGCCCCCAGCGAGCAGCAGACCTATGACTACGCCAAGACCATCCTGTCTCTTATGACCCGGGAGAAACACAATGACGGGAAAGTCCTCATCATCGGAGGAAGCATCGCCAACTTCACCAACGTAGCAGCGACTTTCAAGGGCATTGTCAGGGCCATCAAGGACTACCAGGTCCCCCTGAAGGAGCACGAGGTGACCATCTTCGTCCGTCGGGGTGGCCCCAATTACCAGGAAGGCCTGCGGGTCATGGGGGAAGTAGGGAAGACCACTGGTATTCCGATTCACGTATTCGGCACAGAGACCCACATGACTGCCATCGTTGGCATGGCACTGGGACACCGACCGATCCCAAACCAGCCTCCTACCCCTGCCACTAGCAGGACAGCATCCTTCTCTGAGCCCAGAGTTGCCAATGACGCCACCCCGGCAAAGAAGGCCAAACCGGGAGTCCCACCAGCCAAGGCCACCAGCCTGTTCAGTAAGCACACCAAGTCCCTGGTGTGGGGGATGCAGACACGTGCAGTGCAGGGCATGCTGGATTTCGACTACATCTGCTCCCGGGAGGAGCCCTCAGTCGCTGCCTTGGTCTACCCCTTCACgggtGACCACAAACAGAAGTTCTACTGGGGCCACAAGGAGATCTTGATCCCCGTGTATAAGAACATGAGTGATGCCATGAAGAAGCACCCCGAGGTGGACGTGCTCATCAGCTTCGCCTCCCTGCGCTCCGCCTTTGACAGCACCATGGAGACCATGCAGTACCCACAGATCCACACCATTGCCATTATTGCTGAGGGCATCCCTGAGGCCCAGACCAGGAAGATCATCAAAACCGCAGATGAGAAGGGCGTCACCATCATCGGGCCAGCCACGGTTGGTGGGATCAAGCCTGGCTGCTTTAAGATCGGGAACACAGGTGGCATGTTGGACAACATCCTGGCATCTAAGCTGTACCGGCCGGGCAGTGTGGCCTATGTGTCACGCTCAGGGGGTATGTCCAACGAGCTCAACAACATCATCTCGCGCACCACGGATGGGGTCTTCGAGGGCGTGGCCATCGGGGGAGACAGGTACCCAGGCTCCACCTTCATGGACCATGTGCTGAGATACCAGGACACGCCAGGAGTCAAGATGATCGTGATGTTGGGAGAGATCGGCGGTGCAGAGGAGTATAAGATCTGCCAGGGCATCAAAGAGGGCAGGATCACCAAGCCGGTGGTGTGTTGGTGCATTGGGACCTGTGCCACTATGTTCTCCTCAGAGGTCCAGTTTGGCCACGCAGGCGCCTGTGCTAACCAGGCCAGCGAGACAGCTGTGGCCAAGAACCAGGCCCTGAGGGAGGCTGGAGCCATCGTCCCACGGAGCTTCGACGAGCTGGGGGATGCCATAAAGACAGTGTATGATGACCTGGTTGCCAGTGGTGTCATCGTTCCCGCCCAGGAGGTGCCCCCACCAACCGTGCCAATGGATTACTCGTGGGCAAGGGAGCTGGGCCTGATCCGCAAGCCGGCCTCCTTCATGACCAGCATCTGTGATGAGAGAGGCCAGGAGCTGATCTACGCAGGCATGCCCATCACAGAGGTGTTCAAAGAGGAGATGGGCCTGGGCGGAGTGCTGGGACTGCTGTGGTTCCAGAGGAGGTTGCCACGGTACGCCTGCCAGTTCATCGAGATGTGCCTGATGGTGACGGCTGACCACGGCCCTGCGGTGTCCGGCGCCCACAACACCATCGTCTGTGCCCGCGCTGGCAAGGACCTCATCTCTAGCCTCACCTCCGGCCTGCTCACCATTGGCGACCGGTTCGGAGGCGCACTGGACGCAGCGGCCCGGCAGTTTAGTAAAGCCTTCGACAGTGGACTAATGCCCATGGAGTTCGTCAACAAGATGAAGAAGGAAGGCAAACTCATCATGGGCATCGGACACAGGGTCAAATCGAAGCCTAACCTGATCCTGAATGTAGACGGCTTCATTGGGGTGGCATTTGTGGATCTGCTAAGGACTTGCGGTGGCTTCACACGGGAGGAGGCTGACGAGTACGTGGAGATCGGCGCTCTGAACGGGATCTTCGTGCTGGGCCGGAGCATGGGCTTCATTGGACACTACCTAGACCAGAAGAGGCTGAAGCAGGGCCTATACCGCCACCCTTGGGATGACATCTCCTATGTGCTTCCAGAGCACATGACCATGTAACCACAGCAGCTCAGGAGTGCCCcctgggggaggggtggggacCACAGATTATATatcacatatataatataatctccACAAACTGCAAGTGATCCACGATCAGCTTGAGCTCATtcataatttaagaaaacaaacacacaaggcaTCATCCCTCAAACAACAATGCAATTAAACCTATACACCCTAAACCTGCGGGTGTATGTTAAGAGAACCAAGCTTTTTGAAATCTCGAAGTATACGAGGTGCTCGTCACTGTGAAGATCTTTTTAGTGTTACCATCCAACATTCTGTGGTGCGATAGAGGAAGAAACCTCAAAACCATAATCGTCTGTATCACAGTGTCACTTCAATGGAGATCAATGGGATCATCTCATGCCTACCTGTAAAAATGTTGCCTATTTGTTCTTTCATCCACCAATAATTTATATTCTACTACTACTAGAGCCAACTACTAGGGTAAGGAATGCTTGTTTCCCCCTTTACGGTCTCCAGCTCTTTAAATCAAAGCATGCAGTTGTGGGTGACTCCTAGTGCAATAAATTCTGCCACTCTCTAACCTAGGCAATAGTTTGATATCACTGAGGGCAGGGGAGGGAGGGTTATGCTagttaaataacaaatgaatgtaaatgCTGATCGGCTGTGTGGGTCTTCCATCAGATGCATGATCAGAGGAaggatacaaataaaatgcactatTGACAAGAGTTAGGTTGCTTTCTTCAGGGTGGGGCAGCACAGTGAAGCACTTCAATGCCGTGATTGGGAATGCATTGCGTGAATACTGAGATGATCTTAGGAAGAATCCATTGCTAATTGGTGAGTGTTTTCCCCACCAGCCTGCCAAGTGAAACAGACCAGAACATTGAGTCTTAATGAGACAATGGTGAGGAACATGAAAACTAGTCTGCATTCCCCTCCCCTCcgcccccctacacacacacttggCGTTACTGTAGGCtagtttgaaatgtgtgtgtttaactctGTAACTGTGGTATTTTAAGAGGGACCCTTTCTTGTAAAACATCACATTCCGTGTTCAGCCGCTTGTTAAGATTGTCTGTGAAGTCGATTGAATCACCGGTCCCGTGAAAACTCATCCGcctgctgtttttctatttttattattttattttgttttacttggttttatttgatgtgaaataaatgtgctatattattattgttatactattattattattattattattattattgttattaatataatcTCCAAAAAATCTCCCCATAATATTGtagtttcaatttaaaataaagacatccTCTTAGTTAA
>TU20772
GCATCTTTCTCTTCCAGAAGCCTAACCTGATCCTGAATGTAGACGGCTTCATTGGGGTGGCATTTGTGGATCTGCTAAGGACTTGCGGTGGCTTCACACGGGAGGAGGCTGACGAGTACGTGGAGATCGGCGCTCTGAACGGGATCTTCGTGCTGGGCCGGAGCATGGGCTTCATTGGACACTACCTAGACCAGAAGAGGCTGAAGCAGGGCCTATACCGCCACCCTTGGGATGACATCTCCTATGTGCTTCCAGAGCACATGACCATGTAACCACAGCAGCTCAGGAGTGCCCcctgggggaggggtggggacCACAGATTATATatcacatatataatataatctccACAAACTGCAAGTGATCCACGATCAGCTTGAGCTCATtcataatttaagaaaacaaacacacaaggcaTCATCCCTCAAACAACAATGCAATTAAACCTATACACCCTAAACCTGCGGGTGTATGTTAAGAGAACCAAGCTTTTTGAAATCTCGAAGTATACGAGGTGCTCGTCACTGTGAAGATCTTTTTAGTGTTACCATCCAACATTCTGTGGTGCGATAGAGGAAGAAACCTCAAAACCATAATCGTCTGTATCACAGTGTCACTTCAATGGAGATCAATGGGATCATCTCATGCCTACCTGTAAAAATGTTGCCTATTTGTTCTTTCATCCACCAATAATTTATATTCTACTACTACTAGAGCCAACTACTAGGGTAAGGAATGCTTGTTTCCCCCTTTACGGTCTCCAGCTCTTTAAATCAAAGCATGCAGTTGTGGGTGACTCCTAGTGCAATAAATTCTGCCACTCTCTAACCTAGGCAATAGTTTGATATCACTGAGGGCAGGGGAGGGAGGGTTATGCTagttaaataacaaatgaatgtaaatgCTGATCGGCTGTGTGGGTCTTCCATCAGATGCATGATCAGAGGAaggatacaaataaaatgcactatTGACAAGAGTTAGGTTGCTTTCTTCAGGGTGGGGCAGCACAGTGAAGCACTTCAATGCCGTGATTGGGAATGCATTGCGTGAATACTGAGATGATCTTAGGAAGAATCCATTGCTAATTGGTGAGTGTTTTCCCCACCAGCCTGCCAAGTGAAACAGACCAGAACATTGAGTCTTAATGAGACAATGGTGAGGAACATGAAAACTAGTCTGCATTCCCCTCCCCTCcgcccccctacacacacacttggCGTTACTGTAGGCtagtttgaaatgtgtgtgtttaactctGTAACTGTGGTATTTTAAGAGGGACCCTTTCTTGTAAAACATCACATTCCGTGTTCAGCCGCTTGTTAAGATTGTCTGTGAAGTCGATTGAATCACCGGTCCCGTGAAAACTCATCCGcctgctgtttttctatttttattattttattttgttttacttggttttatttgatgtgaaataaatgtgctatattattattgttatactattattattattattattattattattgttattaatataatcTCCAAAAAATCTCCCCATAATATTGtagtttcaatttaaaataaagacatccTCTTAGTTAAGT

Function

symbol description
aclya Predicted to enable ATP citrate synthase activity. Predicted to be involved in acetyl-CoA biosynthetic process and fatty acid biosynthetic process. Predicted to act upstream of or within citrate metabolic process and lipid metabolic process. Predicted to be located in mitochondrion. Predicted to be active in cytosol. Is expressed in several structures, including axis; digestive system; nervous system; optic vesicle; and periderm. Orthologous to human ACLY (ATP citrate lyase).
acly Enables ATP citrate synthase activity. Involved in acetyl-CoA biosynthetic process; carboxylic acid metabolic process; and lipid biosynthetic process. Located in cytosol; nucleoplasm; and plasma membrane.

NR:

description
PREDICTED: ATP-citrate synthase isoform X3

GO: NA

KEGG:

id description
K01648 ACLY; ATP citrate (pro-S)-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016934 True 4460 mRNA 0.52 25 35158597 35204230
TU20772 False 1574 lncRNA 0.42 3 35201145 35204232

Neighbor

gene id symbol gene type direction distance location
AMCG00016929 NA coding upstream 16808 35137549 ~ 35141789 (+)
AMCG00016930 NA coding upstream 27592 35121947 ~ 35131005 (+)
AMCG00016928 dnajc7,LOC106607285 coding upstream 41929 35097590 ~ 35116668 (+)
AMCG00016927 NA coding upstream 77349 35033815 ~ 35081248 (+)
AMCG00016926 NA coding upstream 143931 35010365 ~ 35014666 (+)
AMCG00016932 klhl11,LOC107097235,LOC103373141 coding downstream 1648 35205880 ~ 35212613 (+)
AMCG00016933 NA coding downstream 16330 35220562 ~ 35232529 (+)
AMCG00016935 NA coding downstream 43275 35247507 ~ 35260480 (+)
AMCG00016941 NA coding downstream 348990 35553222 ~ 35555196 (+)
AMCG00016943 NA coding downstream 419118 35623350 ~ 35623650 (+)
G16705 nkiras2,kbrs2,LOC106607286 non-coding upstream 64505 35091459 ~ 35094092 (+)
G16698 NA non-coding upstream 337184 34821197 ~ 34821413 (+)
G16692 NA non-coding upstream 381550 34775825 ~ 34777047 (+)
G16668 NA non-coding upstream 422048 34736337 ~ 34736549 (+)
G16646 NA non-coding upstream 558680 34597822 ~ 34599917 (+)
G16731 NA non-coding downstream 36547 35240779 ~ 35241527 (+)
G16771 NA non-coding downstream 58820 35263052 ~ 35265068 (+)
G16775 NA non-coding downstream 66401 35270633 ~ 35275819 (+)
G16778 NA non-coding downstream 74597 35278829 ~ 35279068 (+)
G16779 arhgap23,LOC103363845 non-coding downstream 77939 35282171 ~ 35282760 (+)
G16550 NA other upstream 1057734 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 1059001 34093276 ~ 34099596 (+)
G16546 NA other upstream 1110877 34047371 ~ 34047720 (+)
AMCG00016901 NA other upstream 1484236 33668593 ~ 33674361 (+)
AMCG00016898 NA other upstream 1508517 33630012 ~ 33650080 (+)
G17193 NA other downstream 3291819 38496051 ~ 38503632 (+)
AMCG00016979 NA other downstream 4034841 39239073 ~ 39254490 (+)
G17697 NA other downstream 7187065 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 8921982 44126214 ~ 44137931 (+)
G18192 NA other downstream 9450420 44654652 ~ 44656098 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000161_01012565_01040932 ACLYB, ACLY, ACLYA coding CI01000161 null 1012565 ~ 1040932 (+)