AMCG00016956 (plxna1,LOC104944641)


Basic Information

Item Value
gene id AMCG00016956
gene name plxna1,LOC104944641
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 37687015 ~ 37688235 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016956
ATGAGGCCACTTTCCAGATGTCCTAGCCCCTCTCTGTATCTGTGGAGCCTTTTGATTTTGGGTGCCCTGGCCTCCACCATTGCTCGAGAGAGCCCTAAACCTTTCAAAACGTTTTCCCCAAAGGAAACTGGTCTGACGCACTTGGTGATACACAACAAAACGGGGGAAGTGTATCTGGGGGCCGTTAACTGGATTTACAAGCTCTCCAACAACCTCACCTTGTTGAGGAATCATATGACAGGCCCGGTTGAAGACAACGAGAAATGCTACCCACCTCCCAGCGTCCAGTCCTGCCCCCACGGTCTGGTCCACACCAACAACGTCAACAAGCTACTGCTGGTTGACTACACCCAGAACCGCCTCATTGCTTGTGGCAGTGCTTCTCAGGGGATCTGCCAGTTCTTGCGGCTGGATGACCTCTTCAAGCTTGGGGAGCCCCACCACCGCAAGGAGCATTACCTTTCCAGTGTCAACGAATCGGGAACCATGTCTGGTGTCATCATCGAGGGCCTCAATGGGCTGAACAACAAGCTCTTCATCGGCACACCCATTGATGGCAAATCGGAGTACTTCCCAACCCTCTCCAGCCGGAAGCTCATGGTCAACGAGGAGAATGCGGACATGTTCAGCTTTGTCTACCAGGATGAGTTTGTTTCCTCCCAGCTGAAGATCCCCTCTGACACCCTCTCCAAGTTCCCTGCATTTGACATCTACTACATCTATAGCTTCAGCAGTGAGCAGTTTGTGTATTACCTCACCCTGCAGCTGGACACACAGCTCACTTCCCCGGATGCCAGCAGTGAACAGTTCTTCACCTCCAAGATTGTGCGCCTTTGTGTCGATGACCCCAAATTCTACTCCTATGTGGAATTCCCCATTGGCTGCACCAAGGATGGCGTGGAGTACCGTCTCATTCAGGACGCTTTCCTCAGCAGGCCGGGCAAACATCTGGCCCGCTCGTTGGAAATCTCAGAGAAGGAGGACATCCTGTTCACGGTCTTCTCCCAGGGGCAGAAGAACCGGGCTAAGCCCCCCAAGGAGTCGGCCATGTGCCTCTTCACTCTGCGCAAGATCAAGGAGAAGATCAAAGAGAGGATTCAGTCCTGCTACAAGGGAGATGGGAAACTCTCCCTGCCCTGGCTGCTCAACAAGGAGCTGGCCTGTATCAACTCGGTAAGTGGACAAGCCTTATGTGTAGCTCTTGATTTTGTATTGGTATGA

Function

symbol description
plxna1 Predicted to enable semaphorin receptor activity. Predicted to be involved in several processes, including generation of neurons; regulation of GTPase activity; and regulation of cell shape. Predicted to act upstream of or within dichotomous subdivision of terminal units involved in salivary gland branching; neuron projection morphogenesis; and regulation of smooth muscle cell migration. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: plexin-A1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016956 True 1221 mRNA 0.53 1 37687015 37688235

Neighbor

gene id symbol gene type direction distance location
AMCG00016957 plxna1,LOC106572368 coding downstream 117510 37535873 ~ 37569505 (-)
AMCG00016955 plxna1,LOC106572368 coding downstream 187854 37418427 ~ 37499161 (-)
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding downstream 985033 36682750 ~ 36701982 (-)
AMCG00016953 LOC107715024,LOC107664194,LOC102787184 coding downstream 1117004 36566281 ~ 36570011 (-)
AMCG00016952 NA coding downstream 1407338 36252375 ~ 36279677 (-)
AMCG00016958 tpra1 coding upstream 373838 38062073 ~ 38071943 (-)
AMCG00016964 NA coding upstream 403814 38092049 ~ 38114746 (-)
AMCG00016963 LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252 coding upstream 453526 38141761 ~ 38146133 (-)
AMCG00016962 NA coding upstream 461270 38149505 ~ 38163660 (-)
AMCG00016961 NA coding upstream 482917 38171152 ~ 38174324 (-)
G17021 NA non-coding downstream 272205 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 349905 37241759 ~ 37337110 (-)
G16988 NA non-coding downstream 490937 37195762 ~ 37196078 (-)
G16986 NA non-coding downstream 512852 37173881 ~ 37174163 (-)
G16979 NA non-coding downstream 977660 36709151 ~ 36709355 (-)
G17033 NA non-coding upstream 127342 37815577 ~ 37816017 (-)
G17039 NA non-coding upstream 170089 37858324 ~ 37858524 (-)
G17094 NA non-coding upstream 401444 38089679 ~ 38117255 (-)
G17140 NA non-coding upstream 637015 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 651340 38339575 ~ 38339875 (-)
AMCG00016938 NA other downstream 2287985 35395992 ~ 35399030 (-)
G16563 NA other downstream 3579074 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 4173436 33488725 ~ 33513579 (-)
AMCG00016889 LOC107570748,LOC106906011 other downstream 4252364 33391789 ~ 33434651 (-)
G16356 fzd2,LOC107583044,LOC107658461,LOC107729561,LOC106607305,LOC106601035 other downstream 4508132 33176076 ~ 33178883 (-)
G17032 NA other upstream 69922 37758157 ~ 37758471 (-)
AMCG00016959 NA other upstream 187015 37875250 ~ 38058939 (-)
G17421 NA other upstream 3528416 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 4248691 41936926 ~ 41938563 (-)
G17842 NA other upstream 5120476 42808711 ~ 42864616 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_03277026_03283028 PLXNA1 coding CI01000001 null 3275743 ~ 3283450 (-)