AMCG00016963 (LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252)


Basic Information

Item Value
gene id AMCG00016963
gene name LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38141761 ~ 38146133 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016963
ATGGAGCAGTCTGACCAGGCAGCCCCTGACTCAGGATCTCAAGAGGTGAACCCTGTCTTCTTGCAGCAGCTGAGAGAGCTTGATATCCCAGAGGAAGCAGCTAAACAGGCTCTTCTACACACCAGGAATGTGTCAGCTGAAGAAGCAGCCATGTACTATTTCAACAAACTTGAAAATGAGGAGGAAGGAGATGAAGACCTGTTGTTTAAGATGGTGTTTGTTGTAAACATGGAGCTGTCCATGGGAGTGGGAAAGGTGGCTGCACAGGTGGGCCATGCTGCAGTTGGACTATACCAGGCACTACAGGAGAAGAACAGCTGGCGAGAGATGGCCTGGAAATGGGACCATGCTGGTGCCAAGAAGGTGGTTGTACAGGGAACAAATATGGCCCATCTTTTGGAGCTCCAGGCCCTGGCTATGAGCCTCAGTCTACCCACTTACCTGGTTGAACCTGGGTCCCGTACTGTCTTGGCGATTATCGGAGAGGAGGAAATGGTCAACAATGTAACTGGAAATCTGAAACTGCTCTGA

Function

NR:

description
PREDICTED: probable peptidyl-tRNA hydrolase 2

GO: NA

KEGG:

id description
K04794 PTH2; peptidyl-tRNA hydrolase, PTH2 family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016963 True 531 mRNA 0.50 6 38141761 38146133

Neighbor

gene id symbol gene type direction distance location
AMCG00016964 NA coding downstream 27015 38092049 ~ 38114746 (-)
AMCG00016958 tpra1 coding downstream 69818 38062073 ~ 38071943 (-)
AMCG00016956 plxna1,LOC104944641 coding downstream 453526 37687015 ~ 37688235 (-)
AMCG00016957 plxna1,LOC106572368 coding downstream 572256 37535873 ~ 37569505 (-)
AMCG00016955 plxna1,LOC106572368 coding downstream 642600 37418427 ~ 37499161 (-)
AMCG00016962 NA coding upstream 3372 38149505 ~ 38163660 (-)
AMCG00016961 NA coding upstream 25019 38171152 ~ 38174324 (-)
AMCG00016967 NA coding upstream 36169 38182302 ~ 38219837 (-)
AMCG00016968 NA coding upstream 214401 38360534 ~ 38371250 (-)
AMCG00016969 NA coding upstream 360023 38506156 ~ 38513767 (-)
G17094 NA non-coding downstream 24506 38089679 ~ 38117255 (-)
G17039 NA non-coding downstream 283237 37858324 ~ 37858524 (-)
G17033 NA non-coding downstream 325744 37815577 ~ 37816017 (-)
G17021 NA non-coding downstream 726951 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 804651 37241759 ~ 37337110 (-)
G17140 NA non-coding upstream 179117 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 193442 38339575 ~ 38339875 (-)
G17149 NA non-coding upstream 194250 38340383 ~ 38340835 (-)
G17164 NA non-coding upstream 239688 38385821 ~ 38386161 (-)
G17166 NA non-coding upstream 245537 38391670 ~ 38392072 (-)
AMCG00016959 NA other downstream 82822 37875250 ~ 38058939 (-)
G17032 NA other downstream 383290 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 2742731 35395992 ~ 35399030 (-)
G16563 NA other downstream 4033820 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 4628182 33488725 ~ 33513579 (-)
G17421 NA other upstream 3070518 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3790793 41936926 ~ 41938563 (-)
G17842 NA other upstream 4662578 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4802858 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 5134104 43280237 ~ 43286603 (-)

Expression


Co-expression Network