AMCG00016964


Basic Information

Item Value
gene id AMCG00016964
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 38092049 ~ 38114746 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016964
ATGAGCATAGTAATCCCTCTGGGAGTCACCACACCAGATACGTCTTACTCCGATATGGCTGCTGGATCAGACCCTGAGTCAGTTGAAGCGAGCCCTGCTGTCAATGAGAAGGATACCTACTCCAATCACAGCTGTGGGAATGCTCAGAATCATGGGTATCGGGGATTACCCTATGCTGATCACAACTATGGCGcgccccctcccccaaccccaCCGGCATCTCCACCCACACAAACTATCATTCCTCGTGTTGAGCTCAACGGGGTGCGCTCTCGCTATGAGGAGAATTCGGCTGACAGTGACAGCTCCTCTGATGAGGACAATGTGTCCAGCTGGTGTCACTGCAGTCTGACTCAGGATGGCTTCCTTATCAAATGTGAAAACTGCAGGGGCTTGGACCGGAGGAAGGGGGGTGATGTTCAGCGtaggaaaacagaaaatgtgtctgGGGGAGAGAGTAGTGCCACAGAGAGCGGGGACGAGGAGGTGTCTCCAGCGACTGTGTCCTACACTGCCACACAGCACACCCCCACCAGCATCACCCTCACCGTCAACCGCGTCAAGAGAACCAAACccaagaaaaggaagaaaagcaCGGAAAAAGCACGGAGTGCACCCaaggcaaagaaaataaagGCCTTCCGTGAGGGATCTAGAAAATCCATGCGAATGAAGAATTCAACAACGGAGGCAAACACTTTGGATGAGAACACCACCGAGGGCTGGGAGACCCGTATTCGGCTGTGGACAGACCAGTACGAGGAGGCCTTCTCCAACCAGTACAGCGCAGACATTCAGACGCTGCTGGAGCTTCACTGCATCACCAGCAAGGACTCGGTGGGCAAGACCGCAGCCATGGACACCATCAACAAAACAGAGCTGGCCTGCAACAACACTGTCATCGGCTCTCAGATGCAGCTGCAGCTTGGAAGGGTGACTCGAGTGCAGAAACATAGGAAGATCCTTCGAGCTGCCCGGGACCTGGTTCCCGACACACTGATCATCGAGTACCGCGGGAAGGTCATGCTCAAGCAACAGTTTGAAGTCAATGggcatttctttaaaaaaCCATACCCCTTTGTGCTGTTCTACTCCAAGTTTAATGACGTTGAAATTTGTGTGGATGCCAGGACATTTGGTAACGATGCCAGGTTTATCAGAAGGTCTTGTACTCCAAATGCTGAGGTTCGACACATGATTGCTGATGGGATGATCCACTTATGTATTTATGCTGTCACCCACATAACAAAAGATTTGGAAGTAACCATTGGCTTTGACTATGAGTTTAACAGTTGTAATTATAAAGTGGATTGTGCGTGCCATAAAGGGAACCAGAACTGCCCAGTACAGAAGCACAACCTGAGTCCTATGGAGTTGCTTCCTCCCCCGCCCCAACCCCCAGTGCCCGCACAGGTGGGGGCAGAGACCAGGCGCAGGAAAGCCCGGCGAAAAGAGCTGGAGGTGGGAACACAGGGGAGCGTGTCAGACGACAACAGTAACCAACAGCCAGAGGATCCAACAGATTCCAAAGACCACCAGGGTGTCCTCAATGCAGCCAGTGATACAGAGGATGGATATGGAGAAGGACTGAAGCTTGAGGAAGGTGAAGAAGCCGAACTTGATGAGTATGGAGCCTTACAAAACAGACGGTCACGAGATGACCGAAAGGCTGAGGCCATCATGCACGTGTTTGAGAACCtggagaagaggaagaggaggaacaTCCAGAGCCAGGACAGGTGCTTGAGCAGCTCTGGGGCAGCTTCCAGTCCCGTCACCCCGGCAGCCGAGGAATCCAAACCAGAGTCCCAGGAGCTGGAAGACTCCGTCCTCCTCCCACCCGGGACCCAGGCACCCCAGAGCAGTGGGGCTGGAGTCAGTACGCGCCGTGCCTCCTACAGCACAGAATTGGTTCCCATGGCAGAAAAAGTTCCTGCCAAACCAGCTCCTGCAAAGTCCTCCAAGCCAAGACCCAAGAGTCGTATGTCCCGCTACCGCTCCAGCTCTTCCCAGCGTGCTCGTCGGCAAAGGCAGGCCCTGGCACAGCAGGCGGCAGAGCAGGGGCAGGCCGTCGCGGAGGAAGGCACTCCTGGCCTGTGTGGTGCTGATCCTGGCAGTACAGAGGGGCTACCGATCAACGGCCCCCTGATGGACGTAGATGGGGCAGGGGCAGGTGTTTCTGGAGCCTTGGGTAACAGGGCAAACCTTCGATACCCCAAAACTAAAAAGTATCTAGTTACAGAGTGGTTAAACGATAAGGTCATCGAGAAGCCCGAGTGCCCGATCGACCGACCTCTGCGAATCACCACCGACCCGACAGTGCTGGCCACTACCTTGAACATGCTTCCTGGTCTCACCCACTCCCCCCTCATCTGCACTAACCCCAAACACTACATCCGTTTCGGATCGCCATTCACCCCAGAGAGACGCAGGCGTCCCGTAAATGTGGATGGCACTTACGGCTCTTTTAAGAAGCGGTGGATCAAACAAGCTTTGGACGAAGGCATGTCTTCGAAGAGTGCAGAGGACGGGACAGAATCGAACTCATCAAACCAAAGTTGCAACAGCAGTAACTCCTCCAACCCCAACCCCTACAAAACAGAGTTAACTGCGCCTTTTAAGAAGCGGAAATCAAAGTACATCCCAGAAACCAGCCCCTTAGAGCTGCCCCGGCCCCTTTCTCCGATCACACCCCCACTGCCCACAGACACCATCACACCTCTCTTGGCCGCCTCTTGTGCCCTCATTTTGGATGAAGAGGAGAAACGCAATGGATACAGTCTCCCCTACTCCCCCCTTCACTCCCTCTCTGCCAGTCACTGTAATACCCCGTTACAGTTTGAGCCTTGTCTGCGAACAGATTTCGATCCATCCCGGGCAGTTTTTCCAGATCTTTCCCTTTCCTCCAGTCTGGAAAGTCCTGTGCTGCCTGCCCCGGGAGTGGCTGAGGACCTTGCTACCTTGCAGGAGGCCCTGGGCCCTGGGGTAGGCCTACCTCTTAGCGGGGCAGCCGAGGCAGTATTCAGCGGAAGGAGTCTGGATAGCCAAGCACAGACAAGAGAGCAGGCCTTGAGGACAGAATTCAATCTTATATATGCTTGCTCGCCACTGAATGCTAACCTGGGATCTGGAAACCTCACAGAGGGACTTGGCAAGGGGTCGGCCAGTGACAGGCGGCCGTCTCTGTCAGAGGGCAGTTTCTCCCCAGCGGAATCCTTCTTTGGTCGTGCTGGACAGGGCCTCCTCTCTGAGCAGGGCCAGGGCTCCATGTCGCCATATGGAGACAGGCAGTACATTTATCCTGACAGTGGAACACCACCCCACCCTCACAACCCTCCCCAGAAAAAGAAGGCAAGTCCTTGCATCACTgTCTCTCTGCTGGAGTACAGGAAGCGGAAACAAGGAGCGAAAGAGGGCTTCCCGAATGAGCCATTGAATTCCATGGGCACACCAACCAGACCAAGTACTATTTGTGGGAGCAGCGGAGACTCCCCCGGCCTTCCACGGACAGTGCTGCGAGCCCCCATGTCCCCTCAAAGCAACTTCTCTTCCCCCATACACCCCTCCATCCCCCAGATAGAGGAGGTTAGCCCCCCAGACCATAGCACAGTCCAGCACTGTGCAGCCCAGGCTGTCAGCTCACAAGCCAAAGGCCAGGACTCCCTTAGTAGCCACTGGATGGTGCCCACCTCAGTGGAGAGGCTGCGTGAGGGCCAGGGGGTGCTGGAGAGAGTCCTGCGTGGGAGCATGAAGATGGACCGGGTTCTCAAGAGAGTGGAGAGCAGTTCAGGAGACAACTCCCGGGACAAGGACTCAGGGACCCAGGCCGAGTCTCAAGGCTTCCTTCAGCAGAACATGTCTCCATTCCGCAGTCACAGCAGCTCCTTCAGCCACTCAGCCCCCTCCCCCGGACATGGCTACCGATCGTCTTCACACACGCTGACCCAAGAGGCCCCCCCGCCACCTGCTGCCTACACTAGCCCTGTcagctcttcctcctcctctgtggaCTCTGTGAGTGCCAGGCACCCAAGTATCACCGGCCAGCAGCATTCTGGGAGCGTTGCACATTTGTACAGTGGAGGCCATTTAAAGACCAGCTTGTTTAACAACCTGTCCTTGGGAGCCGCTGCCTCTCCCTTACCCCAGGGCAACCCCTTGAAAACCGTTTCTACAGATTCCAGTGTGGCTCCCACAGCCACCATTGCTGCTTCCGTTAACCCCACCTCAGTATCGCATAACTCCAGACTGTCCCAATCTGGGTTACGAACCTTAAGCCCCACGAGCCCAGGGCAGACTGTGCTGCAGTCTGGCAGTAGGTTGCTGGCAGCTGCCAACTCACAGCACTACCAACAGCGGGCTTCTACCATCAACCAATTCCAGCACCCACAAATCCAGGGATCCGGAGTGAGGACACAGTCGGGAAGTTATTAG

Function

GO: NA

KEGG:

id description
K23216 SETD5; SET domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016964 True 4434 mRNA 0.55 21 38092049 38114746

Neighbor

gene id symbol gene type direction distance location
AMCG00016958 tpra1 coding downstream 20106 38062073 ~ 38071943 (-)
AMCG00016956 plxna1,LOC104944641 coding downstream 403814 37687015 ~ 37688235 (-)
AMCG00016957 plxna1,LOC106572368 coding downstream 522544 37535873 ~ 37569505 (-)
AMCG00016955 plxna1,LOC106572368 coding downstream 592888 37418427 ~ 37499161 (-)
AMCG00016954 txnrd3,LOC100702976,LOC106511133 coding downstream 1390067 36682750 ~ 36701982 (-)
AMCG00016963 LOC108427613,LOC103025619,LOC104955611,LOC104930301,LOC103373509,LOC100704252 coding upstream 27015 38141761 ~ 38146133 (-)
AMCG00016962 NA coding upstream 34759 38149505 ~ 38163660 (-)
AMCG00016961 NA coding upstream 56406 38171152 ~ 38174324 (-)
AMCG00016967 NA coding upstream 67556 38182302 ~ 38219837 (-)
AMCG00016968 NA coding upstream 245788 38360534 ~ 38371250 (-)
G17039 NA non-coding downstream 233525 37858324 ~ 37858524 (-)
G17033 NA non-coding downstream 276032 37815577 ~ 37816017 (-)
G17021 NA non-coding downstream 677239 37414114 ~ 37414810 (-)
G16992 NA non-coding downstream 754939 37241759 ~ 37337110 (-)
G16988 NA non-coding downstream 895971 37195762 ~ 37196078 (-)
G17140 NA non-coding upstream 210504 38325250 ~ 38326037 (-)
G17148 NA non-coding upstream 224829 38339575 ~ 38339875 (-)
G17149 NA non-coding upstream 225637 38340383 ~ 38340835 (-)
G17164 NA non-coding upstream 271075 38385821 ~ 38386161 (-)
G17166 NA non-coding upstream 276924 38391670 ~ 38392072 (-)
AMCG00016959 NA other downstream 33110 37875250 ~ 38058939 (-)
G17032 NA other downstream 333578 37758157 ~ 37758471 (-)
AMCG00016938 NA other downstream 2693019 35395992 ~ 35399030 (-)
G16563 NA other downstream 3984108 34106690 ~ 34107941 (-)
AMCG00016891 limd2,LOC107674139,LOC107658411 other downstream 4578470 33488725 ~ 33513579 (-)
G17421 NA other upstream 3101905 41216651 ~ 41217231 (-)
AMCG00017014 NA other upstream 3822180 41936926 ~ 41938563 (-)
G17842 NA other upstream 4693965 42808711 ~ 42864616 (-)
AMCG00017051 NA other upstream 4834245 42948991 ~ 42974433 (-)
AMCG00017061 NA other upstream 5165491 43280237 ~ 43286603 (-)

Expression


Co-expression Network