AMCG00016979


Basic Information

Item Value
gene id AMCG00016979
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 39239073 ~ 39254490 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016979
CCCCTCTCTCGCCATATTCTCCATGTAAACTATCAGAAACCTCTGCTATTCTCCATTGCACAGCTCTTATTTGAGGAACATAAGTCAAAGCAGTTACAGAAACAAGATGGCCAATGTGTCCTATCATATCTCCAACCTACTGGAGAAAATGACATCTACTGACAAAGATTTTAGGTTTATGGCCACCAATGACTTGATGATGGAGCTCCAGAAGGACTCCATCAAATTGGATGAAGACAGTGAGAAGAAGGTGGTCACCATGCTGCTCAAACTGCTGGAGGACAAGAATGGAGAGGTGCAGAACCTGGCGGTCAAATGCCTGGGTCCCCTGGTGAGCAAAGTGAAGGAGTACCAGGTGGAGACCATCGTGGACACGCTCTGTTTCAACATGCTGTCAGACAAGGAGCAACTGAGGGACATCTCTAGTATGGGTCTGAAGACTGTCATCGCCGAACTCCCACCAACCTCTACGGGGTCGGCTCTGACAGCTAATGTGTGCAGGAAAATCACTGCTCAGCTGACAGGGGCCATTGGGAAACAGGAGGATGTGTCTGTTCAGCTGGAAGCCCTGGACATTCTCTCTGACATGCTGAGCAGGTTGAGTGGGACTCTTGTCAGCTTCCACCCATCCATCCTGGGCAGCCTTCTGCCCCAGCTCACCAGCCCCCGCCTGGCAGTGAGGAAGAGAGGCATCATTGCCCTCAGTCAGCTGGTGCCCAGCTGCAGCTCAGCCATCTTCTCCCAGCTCACAGAGCACCTGCTGACCGAGCTGTCCAGGAACGAATCCACCTCCACCACCCGCACCTACATCCAGTGTCTGGCTGCCATAAGCCGCCAGGCAGGACACCGAGTGGGAGAACACCTCGAGAAGATCATGCCGGTGGTGGTGAAGTACTGCAACGTGGAGGACGACGAACTGCGAGAGTACTGCTTCCAGGCCTTCGAGGCCTTTGTCAGAAGGTGTCCCAAGGAGATGTCTCCCCACATCCCCACTGTCATCAAACTGTGTCTCAAGTACATCACATACGATCCCAACTACAATTATGACAACGACGAGGATGAGGAGGACTCCATGGAGGCAGACAATGGGGAGGATGAGGATCAAGAGCCTGATGACGAGTACAGCGACGATGATGACATGAGCTGGAAGGTGCGGCGCTCCTCGGTCAAGTGCCTGGAGGCGGTGGTGAGCACGAGGCGGGACCTGCTGCAGGAGCTCTACAAGACCGTGTCACCCGCATTGATCGCCCGCTTCAAGGAGCGCGAGGAGAACGTCAAGGCTGACATCTTCCTGGCGTACATCTCCCTGCTGAAGCAGACCCGGCCCATTCAGGCTTGGCTGCAAGCCTCCGACCCTGGGGGCAAGGAGGACCCCTCCCTTGCCATGCTGAAGAAGCAGGTTCCGAGTGTTGTGAAGGCCTTACACAAGCAGCTAAAGGAAAGAAGTATGAAGTCAAGACAAGGGTGCTTCAGTCTTCTTACAGAACTGGCAAATGTGCTGCCGGGGGCTCTAGGGGACCATATACCAGCTGTTATCCCGGGTATAGTGTATTCTCTGACCGACAAATCCAGTTCCTCCAACATGAAAATCGATGCCCTTTCTTTCCTCAATGTCCTTCTTTGTTCTCACCCCCCTGAGGTTTTCCACCCCCACATCAAGGTCATTCTTCCTCCAGTAGTAACCTGTATTGGAGATCCCTTTTACAAGATCACCTCCGAAGCTCTCCTAGTGACTCAACAGCTGGTGAAAGTCATCCGGCCTTTGGAGAAACTCTCCTCTTTTGATGCCAAGCCTTTCGTGAAAGATTTGTTTGCTGGCACTCTGAAGAGGCTGAAAGCGGCCGACATCGACCAAGAGGTCAAGGAGAGAGCCATCTCCTGCATGGGCCAAGTGGTCTGCAATCTTGGGGATCAGCTGGGAGCAGACTTGCAGCCCACTCTCCAGATCTTCCTGGAGAGGCTCAAAAATGAAATCACCAGACTGACCACAGTGAAGACGTTGACTCTGATTGCCGGCTCCCCTTTGAAGATCGATTTGAGGCCTATTCTGGCTGAAGGGATTCCCATCTTGGCCTCTTTCTTGAGAAAGAATCAGCACGCCCTGAAACTCGGCACTCTGACAGCTTTGGACATCATCATTAAGAACTACAATGACTCCCTCAAACCTGCCATGGTAGAGTCCATCCTGATCGAGCTCCCTGCCTTGATTGGAGAGAATGATATGCATGTTTCACAGGTGGCCATCACGCTGCTTACCTCCTTGGCCAAACTCtgcccttcctccctccctaaGATCAGTGGCCCTGTATTGTCTGAAGTCTTCAACTTGGTTCATTCCCCTTTACTACAAGGAGGGGCCCTCAATGCCATTCTCAACTTCTTTCAGGTGTTAGTCGCGACCAAAACGAGCAGCATGGGTTTCAACGAACTCTTGAAGAATTTGACGCGTCCTTTCTATAACCCTCCGCAATCTGCTTGCGCTGCCCCTCTGCACAGGCAGTCCTACTACTCTGTGGCCAAATGTGTGGCAGCCCTGTCCTCCATGTGTCCCAAGGAAGCCACCAGCATGGTCAATAACTTTATCCAAGATGTGAAGAGCACAAAGTCATCGGACTCTGTGAGGATCCTGGCTTTTCTTTGTTTGGCCAAGGTAGGGCACTCCATGAGTCTGGGAGGGCAAAAGGAGGTGAAAACGGTAATCCTAGAAGCCTTTTCTTCCCCGAATGAGGAGGTCAAGTCAGCTGCCTCTTACGCCTTGGGGAACATCTGTGTGGGGAACCTGTCCGAGTACCTTCCCTTTATGCTAAAGGAGATCGGGACCCAGCCAAAGAGGCAGTACCTCCTGCTGCTTTCTTTGAAAGAAGTCATCAGCTCGTCTTCGGTTGAGAGCTTGAAGCCTTACGTAGAAGACATCTGGACGCTGTTGTTCAAGCACTGCGAGTGTGTGGAGGAGGGCACACGCAATGTTGTCGCAGAGTGCCTGGGGAAGCTAACCCTCGTCAACCCCTCACAGTTGTTGCCCAGGCTCAAGAAGCAGCTGTCCGCAGGTTCCCCGCATGCTCGGAGCACTGTTGTCACTGCAGTCAAGTTCACCATTGTGGATCAACCCCTGCCCATTGACTCCCTGCTGAAGGGCTGCATTGGGGACTTCCTGAAGACCCTGCAGGACCCCGATCTGAATGTCCGCCGCGTGGCATTAGTGATGTTCAACTCAGCTGCTCACAACAAGCCCTCCCTAATCCGCGGCCTGTTGGCGACTGTGCTGCCCCACCTTTACAAAGAAACCCAAATCAGGAAGGAACTTGTGCGGGAGGTGGAGATGGGGCCTTTCAAACACACGGTGGACGACGGGCTGGATGTGAGGAAAGCGGCCTTCGAGTGCATGTACACCCTGCTGGACAGCTGCTTAGACTGCCTGGACATGTTTGAGTTCCTCAACCATGTGGAGGAAGGGCTGAAAGATCATTACGATATCAGGATGCTGACATTCATCATGGTGGCCCGACTCTCATCCCTATGTCCCAATGTTGTAATTCAACGACTGGATCAACTGGTGGAGCCCTTGAGAGCCACCTGTACCACTAAGGTGAAGGCTGGATCAGTGAAGCAGGAGTTTGAGAAGCAGGACGAGTTGAAACGCTCAGCAATGCGGGCTGTTGCTGCCCTGCTGTCCATCAGTGAGGTGGAGAAAAGCCACATCATGTCCGAGTTCACGGCCCAGATCAGAGCCAGCTCCGAGATCGCCTCCATCTTTGAGAGCATTCAGAGAGACGCCACCTCCTCCAGCCCCACAGAAACCATGGACACCAGCTAAGGGTACCTAATCCACATCAGGTCCTAGAGGCTGAGTTCTGCAGGTGCTAGGGGTAGCTTTGAATCAGTGCTGTGTAAACCCAGTCCTTAGGAGCCCCTCTCTGGGTTGATCAGTAACCTTTAATCAATTTCTTAACACCTGGAACAATTAAGCAGTTTGtaaaatttagattttatataAAGAACATTATCCTTTACAGCACTAAATTACCCTTTACAGAACAAGTggtttaattgatcaataacttccatgtgCTCCcagtctttcaaaataaatgatttaggCTAACTGACAAAACATACTGGATGGGGGACAGCAATGCTTTAAATGGTCAAATTaagaaatgcaatacaaattaataaaagtgATAAAATAACTCTTCAAACTTACAAAAGAGCACAGCTCTAATGAAAACCAGACCAGTCTCCATCTCTCCATGACCAGGGCTGTACCACCCTCTCCCAGGGTCTAAAGGGGTTTATAAAGCTTTGGCAGATGTTTGTgcacttttttgaaatgcagcaTAAGGTTAAATAAAATGGAGTGAAGCATTGCAGGTATTCAGATATATAGTCATTTCAACCATGTTCTGTGCATCCTTTACTTTCCATTTATCATTTTACTGGCAATAATCCAGGGTATACAAGCACCTACCATCCATAAAAACCTGCAAATGAGAAAGCCTGTAAAATTGTGTTGCTATTCCTGTCAGAACAATACTgcctgtaaaaatacaaataaaccttGTCAAATCATTAAATTCTGAccaacacattaaattaaatgtagaatAAAGTATCCCACCCTACCCAAAAAGCACCTTTGActcaaatgtgtatttcagaTTAATGTCCAAAGCATAAAATTAGGAACCATTACAATAAATGAAAGGGGCTAGTGATTtgagtttttacatttttattcaacaGACAGTTCAAAGTGCACACCAGAAGCCCAGTTTACTCATTCTCTTCACTGCGCAGTCTGGCATTGGGATTGGTAATCTTGATGGCAAGCTGTGCTGCTCTCTCCACAATGATCTTCCTGTTCTTGGAAGAGACATTGTGGGCGATTTCTGCACAGTGGGTCCT
>TU21437
GAACCATTACAATAAATGAAAGGGGCTAGTGATTtgagtttttacatttttattcaacaGACAGTTCAAAGTGCACACCAGAAGCCCAGTTTACTCATTCTCTTCACTGCGCAGTCTGGCATTGGGATTGGTAATCTTGATGGCAAGCTGTGCTGCTCTCTCCACAATGATCTTCCTGTTCTTGGAAGAGACATTGTGGGCGATTTCTGCACAGTGGGTCCTATGCTCATCATGAGAACTTCCAGCTCCTTGATGTTGTGGACTAAGAACTTCCTGAACCCAGATGGCAGCATGTGTTTTGTCTTCTTGTTGCTACCATAACCGATGTTTGGCATCAGAATCTGGCCCTTGAATCGCCTGCGGACTCTGTTGTCAATACCCCTGGGTTTACGCcagttttCTTAATCTTGACATAGCGATCTGACTGATGGCGGATGAACTTCTTTGTCCGCTTCTTGACGATCCTAGGCTTGATTAATGGTCTTAGGGCTGGCATGGTGCCTGCAACATGAAATCTTGTATCAATAGAGTTCCTGAGACTAATCAGCCACTGAAGGCCTGAAACTCAATTCCTAGCCAGCACATGCTGTCGTCGCCGTGATGTCATCAGGAAGGGACAAACACGCATACGTTACAGCTCAACCAAATATCCCATGTGAGTGTGATgggatgtaaaaaaataaataaataaaaatctccaTTATAACTCTGTAAGACCAGTTTCATTTAGAACAAAGTATATTCAGGATATTAGTTAAGTAAAAACAAAGCACTCTCAATTGAACACAGCTGTCGGGACTATATCGGGTGAACGATTAGCAACACATCCACATTTGCAgtatacatttgcttttaaatatatattcatatttgcaACACGTGgcatactgtaaaataaaacaagacaggGAAACAGCGGAGAGCCGGTATACACATGCAGCAGATAAATCCCGTCACCGAACTGCGCTACGTTGAGCAGGCCTAAATCAAAGAaaattactacatttaaaataatgcatacatgtcatgcattgtatttttccctAAAGAATCTACTAGACTcaagaagacattttaaaccacGCAAAATGAACCATTACATGGAAGTGACGCGGACAGGGCCGACGGGGTTCTCCATTAATCACCCATTCTAAATCAATATTAAAGATTGAATTGTGGCAAAAATACACTCCAATATTGGCACAAcataatgtttacaaaatatacaagtGCACTCGATGATGaataaatgcttaatttcaAGGATGATTGTCGATTTGTTTAACTCACCGTCAGTGTGACTGCCTTCCCTGAAGACagcacagaggaagagagagaagctaGAGGATGCCGGGAAATAAGGCAGCGCGCAAGGGAACTACAGCACGAACCGGAAGTGGCATTTTTACAACAAAATTTAAATACCTTCTTAGTGTAATCTAAATCTTAATACCGATTAGCATGCTATATTGTACagatattataatatttttgcGATGATAGTTATGTCCCCCTTAATggtatgtttttcataattagTTACCTTCCAGGACCTGGTCTAAGTTATAACCATGCTGCTTCATACTGTACCTAACATgagaaacacagcaacacacttGAGCATTTTGTGTTATCTTTAAATTGGAGTAA

Function

GO: NA

KEGG:

id description
K17263 CAND1, TIP120A; cullin-associated NEDD8-dissociated protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016979 True 4905 mRNA 0.50 15 39239073 39251721
TU21437 False 1650 lncRNA 0.40 3 39251500 39254490

Neighbor

gene id symbol gene type direction distance location
AMCG00016976 slc6a6,LOC106566182,LOC105006920 coding upstream 438252 38786350 ~ 38800821 (+)
AMCG00016971 lsm3,LOC107562728,LOC107676354,LOC100705055 coding upstream 714296 38513220 ~ 38524777 (+)
AMCG00016973 NA coding upstream 747029 38479332 ~ 38492044 (+)
AMCG00016974 podxl2 coding upstream 767182 38468150 ~ 38471891 (+)
AMCG00016975 NA coding upstream 784409 38448608 ~ 38454664 (+)
AMCG00016981 NA coding downstream 16783 39271273 ~ 39294718 (+)
AMCG00016980 NA coding downstream 50790 39305280 ~ 39323121 (+)
AMCG00016983 NA coding downstream 120770 39375260 ~ 39396596 (+)
AMCG00016982 NA coding downstream 145267 39399757 ~ 39429289 (+)
AMCG00016984 dock3 coding downstream 414710 39669200 ~ 39788816 (+)
G17274 NA non-coding upstream 159176 39079415 ~ 39079897 (+)
G17230 NA non-coding upstream 433127 38754521 ~ 38805946 (+)
G17221 NA non-coding upstream 613050 38625526 ~ 38626023 (+)
G17214 NA non-coding upstream 702740 38536061 ~ 38536333 (+)
G17165 NA non-coding upstream 847001 38391677 ~ 38392072 (+)
G17361 NA non-coding downstream 535599 39790089 ~ 39790567 (+)
G17381 NA non-coding downstream 1013935 40268425 ~ 40284772 (+)
G17419 NA non-coding downstream 1962005 41216495 ~ 41216809 (+)
G17424 NA non-coding downstream 1990812 41245302 ~ 41245519 (+)
G17482 NA non-coding downstream 2347458 41601948 ~ 41605391 (+)
G17193 NA other upstream 735441 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 4034841 35158597 ~ 35204232 (+)
G16550 NA other upstream 5138210 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 5139477 34093276 ~ 34099596 (+)
G16546 NA other upstream 5191353 34047371 ~ 34047720 (+)
G17697 NA other downstream 3136807 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 4871724 44126214 ~ 44137931 (+)
G18192 NA other downstream 5400162 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 5694544 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 10117532 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021281 cand2 coding NC_007133.7 CM002906.2 31045277 ~ 31060579 (-)