AMCG00016994


Basic Information

Item Value
gene id AMCG00016994
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41433692 ~ 41446610 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016994
CCTGCCGGCAGAGGGCTGTGCAAAGAGAAAGTGGATTCCAGTAAAGTCTCCACCAAAGGAGGAGATTCAACCTTGGCCAAGCCGGACCCTCTCCCCCAGTCGGTGACCCTCTTTGTGAACGAGGAAGGCTGTCCCATGCATTTCTACCTGCGCCCCGGCAGCACCAAGAGCCGCTTCCTGGCCCTGATCGAGGGGGGCGGAGGGGTGATGTGCCGTGTGCAGGAGCCGGGGGCCATTCTGCTGGCAGACCCCAAGGAGCTGACGGGAGGGGCTGCCCAGGGGTACATCTCCACCCAGTATGTCCTGGACTGCTTGGAGAGAAACAAGCAGCTGGACTTGGACTCGTACAGGCTCGACTCGGTCCAGTCGGAGGCAGGGAAGGATCCCCCTGCCAGGAAAAAGGAGAGAAGCTTGACAGGGCGGATGTTGTACACCAAAGAGGAGGACGCCGCTATCCTGCGTTATGTGAGGcggcgccggaatgaggtcaaagGCAACAGCATCTGGCAAGCCATGGCACGTGAGGGCATCACTGGGCACAGCTGGCAGTCCATGAAGGACCGCTACCGCAAGCAGCTGGTGGAccagcaacagcagcaggaggaggaggaggaggaggaggaaccGGTGGAGAGACGGGCTACaagacaatttatttttgaaagcaggaCTCTGGAAAAGAGCCCTGAAGTAGCAAAGGTGCCAGAGGTCTCCCAGGGGCCTCCAGCTGACAGTGACCTAGTACGGGACCctggggaggaggaagagcagcaggaggacgaggaggaagagaaaggtGAGGAAGAGCATGTCAGGCCAGTGGCTGCAGTGGAGAAGACACTCAGGGAAATAGAGAACCGTCTGGAGCAACAGAATCAGCCGGTGAATAAACCACAGCTCAAGAGGAAGCAGAGGGAGGAGGGACCTTCAGAGGTGATACCAGTTCACTCCACTCCCAAACAgaatccattttcttttctatggGCAGCAATTAGAGAATTTGAGTCCGATGATGAAACTCCAGACCTAGTTGAAACCGAGAAACCACCAGGCTGTCCCAGCATTCCTGAAAGTGGGTTCCCGGTCCCCAGCCAGGAGCAGGGGGTCCAGGACACGGACAGACCCAGCCAGCCCCAGCCTCGGCCTCCGAGGACCAGCCTGCGAGAGTTTGTCATGAACATGGACTCGCAGCCCCAGCTGGGAGAGATGTCCATAGCCCCTGATCATGAGGAGCCCCCTGAGGCCGAGGTGGAGGAAGCCAAGGAGGCCATGTCATTCCTGATGGAGGAGTCTGGCATGGATCTGGTTCGGGTGATGCAGGCTCTTCTGAAGAACAATGGAGACTTTCAGGCAGCCCGTTCCTACCTGCTCTCTGGCCACCGGGCTGACGTCTGCCCCCTCTGGACCCATCAGGATGACTGCCTCCTGTTGTCAGGAAACCCCTCAGCCCAGCAAACCCTCATTGAGAAATATGGGCAGGAAGCTGTGGCTGTAAGACTTGCTTTCCTCTCGGACTCTGCCTGTTAAAGTTACTGGATGTTCAGTGGGGAATTTTATTTGTGCTCATTGCTGGTCGTGTTCAGAAGGACAAGGTTTGTTTTGAAATTCTCCGTTTCAGAATATCAGTTCCAGCGTGCTTTGGAACATGTTTGGCTGTACTCTTAAGGGAATCCAGGTTTCACTTTGAGATCCATTTATTTACCAAAACTGAACTAAAGCGGATCACTCGGATAGTCGTGTTCCATCAAGATTTGGATATGATCAGTTATGCTTACAACTTACAAAATCAGGTCTATTTTGGTTAGAATCAATATTTTAAgcagttaataaaaataaaagagttCCTGAATACCTACACATGCCCAGTCCTGGGGATCCCTCAATGTTCAACCATGGTGATTCACCCAGtaatgatttaatataaaagCTATACATGTTAACATAGTCtatacaaagtaaaacaaaattgaataagtaattatatatatttttcaattaaagctagtatagatttgtatatatatgtgtgtgtatacagtgtatgcatgtgtataacATTGGGTTATAAACATTACTACTGGAGATATTGGAAACTTTGATATTCCCTTGATTCTTTTATGTAATTGCCTTCTATTTTATACATACTTAGtccaagaaatataattgcatttctgcAAGGGTTAGGTTGCATATAAAGCCATAGGTTTTGCTGTTCCTGTACAACAAGCAGTGGACAAAAATATGAGAGACATTCCAAGGGTCTGTTGTCTTGAAGCTGTACTCTGAATACCTTTATGTAAATTTGACTATTTCTAGAAGTCTGTTGTGTAAGTAGTTTCTTGTAACCTCTACCAGACACAATTTTTATAGTCAACTGTACTGATGGGTATTCCTGGGTATGGGTTCTTTTGAGAATCTTATTTTCTCAGGTAATTCCAGTATATCACACGGACAGCATTCTCAATAATCAATGGCTTATAGtagtttgtatgttttacatttctgattttccacatttcaatATACTGTGTAactatcaaaatgttttttcaacatGTAGCCTATTTAATGTGTACTACTTCTTTTGACTCACATAATGCATTGTTGATTTGATTAagcatatttgtattgatgtttaatgtTAATAGGTATTTTGGTATCCTTATTCTATATTACTTTTtgattgcttaaaaataaatgttggttgcatttataaaatataatttgcatacTGTTCACTTGTGATGAACCTAAAATAACTTTACCTTTGAGTCTGGAATTGGAAAATTTACTAACTGCAACATTGACATGATATTAAAAGCTTTTGATTgggtgaaaatatgtattttattaatttaatgtttctaAAAGTAGGATTGATTGTAAGAAAAACTGCAAATACttcaaaattttaaaataaggacattaaatacttaaaatgc

Function

GO: NA

KEGG:

id description
K11113 TERF2IP, RAP1; telomeric repeat-binding factor 2-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016994 True 2942 mRNA 0.45 4 41433692 41446610

Neighbor

gene id symbol gene type direction distance location
AMCG00016995 NA coding upstream 7632 41402757 ~ 41426060 (+)
AMCG00016989 NA coding upstream 972803 40443930 ~ 40460889 (+)
AMCG00016988 NA coding upstream 1153305 40265941 ~ 40280387 (+)
AMCG00016986 NA coding upstream 1633041 39798135 ~ 39800651 (+)
AMCG00016985 manf,LOC106583751,LOC102787989 coding upstream 1636129 39790933 ~ 39797563 (+)
AMCG00016998 rnf123 coding downstream 3645 41450255 ~ 41457202 (+)
AMCG00016997 rnf123,LOC102204603 coding downstream 11762 41458372 ~ 41464821 (+)
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding downstream 29956 41476566 ~ 41496271 (+)
AMCG00017000 NA coding downstream 211979 41658589 ~ 41670377 (+)
AMCG00017011 NA coding downstream 496939 41943549 ~ 41952515 (+)
G17424 NA non-coding upstream 188173 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 216883 41216495 ~ 41216809 (+)
G17381 NA non-coding upstream 1148920 40268425 ~ 40284772 (+)
G17361 NA non-coding upstream 1643125 39790089 ~ 39790567 (+)
G17274 NA non-coding upstream 2353795 39079415 ~ 39079897 (+)
G17482 NA non-coding downstream 155338 41601948 ~ 41605391 (+)
G17491 NA non-coding downstream 224768 41671378 ~ 41673353 (+)
G17498 NA non-coding downstream 241400 41688010 ~ 41690199 (+)
G17514 NA non-coding downstream 267200 41713810 ~ 41716989 (+)
G17518 NA non-coding downstream 295740 41742350 ~ 41742773 (+)
AMCG00016979 NA other upstream 2179202 39239073 ~ 39254490 (+)
G17193 NA other upstream 2930060 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6229460 35158597 ~ 35204232 (+)
G16550 NA other upstream 7332829 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7334096 34093276 ~ 34099596 (+)
G17697 NA other downstream 944687 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2679604 44126214 ~ 44137931 (+)
G18192 NA other downstream 3208042 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3502424 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7925412 49372022 ~ 49382218 (+)

Expression


Co-expression Network