AMCG00016996 (rnf123,LOC107661915,LOC107726274)


Basic Information

Item Value
gene id AMCG00016996
gene name rnf123,LOC107661915,LOC107726274
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41476566 ~ 41496271 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016996
ATGACCTGGCCTCCAAAGCCAACATCATCATTGACCCAGCGGAGATCATGGCCACGTCGATGGACGACCTGGATGAGGATGAGGAGAGTGGAGCAGCACAGAGGCCGTTTGGAGCTGCAGCGATGGGGGGCGCCCTGGCCcggcccagctggctgagctCCCCGACACTGGGTCGTGCCAACCGGTTCCTCAGCACCGCCGCTGTGAGCCTCATGACCCCCCGCCGACCACTGGCCCCCCCAGAGAAGGTCAAAGTGCGCACCCTGGCCGTGGAACAGAGGACAGAGGAGGACATTGAGGGCAGCCATGGAAATGATGGGCTGTTGCTAGGGAGACCCTCGGAAGAGCCGGACCAGCCAATCGCAGAGAAGTCCCTCTTGGAGATCTTGGATGGCATCGTCATGATGTACAACCTGAGTGTGCACCAGCAGCTGGGCAAGATGGTGGTGGTGTCCGATGATGTCCATGAGTACGCCCTGGCCCTGAAGGACACAGACGAGAAGATTGCACGCTGCCCAGCCAGACTCAACCACCTGAGCCGCCGCCTGGCCTGGATCAATGCCACCATTTACTCCAAGGAGAAGATGCTCGATGTGTACTGGCTGTTGCGTGTGTGTATTCGCACCATCGAGCATGCCGACCGTACCGGCTCTCTGTTCGCCTTCACCCCCGAGTTCTACCTCAACGTGGCCATGAACAGCTACAGCGCGCTCAAAAACTACTTCAGCCCTTCTAACAGCATGGAGGAGCTGCCAGAAGATCTCCCCAGCATTGATGCTGTCAACCCATTTATCCCTGTAGGCTATGAAGACACACTCACCCAGCTCGCTGCCATCTTGGCCAAGCATTTTGCAGATCCCCGTATTGTAGGAACAGACATCAAGGACTCGCTGATGCAGGCACTGGCCAGCTACGTGTGCTACCCCCAGTCCCTGAGAGCGGTGGAGAGGGTCTCGGAGGAACAGCGAGTGGCCATGATGAAGAACCTGCTGGCCCCTTACGAGCAGAGGCCTTGGGCCCAGACCAACTGGATCCTGGTGCGGCTCTGGAGGGGCTGTGGGTTCGGGTACAGGTACACACGGCTGCCCCACCTGCTCAAAACCAAGCCCGAGGATGCCAGCCTGCCCAGCCTGCAGAAGCCTTGCCCCTCCCTGCTGCTCCAGAAGCACATGGCAGAGCTGCTAAGGCAAGACAAGGAGATGGCCGCCAGCTTCCTCAACAGCGTCCTCAACCAGCTCAACTGGGCCTTCTCCGAGTTCATTGGCATGATCCAGGAGATCCAACAGGCGGCTGAGAGGCCCGAGCGCAACTTTGTTGACACGCGCCAGCTGAAGGTGTGCGCCACCTGCTTCGACCTGTCCGTCAGCCTGCTGCGCGTGTTGGAGATGACAGTCACCCTGGTGCCCGAGATCTTCCTGGACTGGAGCCGCCCCTCCGCAGAGCTGCTGCTTCGACGACTTGCACAGctTTTAAACCAGGTGCTAAACCGACTGGAGAGTGTGGATCATTACCCGATCCTGGTGGCTGTGACTGGCATTCTGGTGCAACTTCTGGTGGATTGCGAGAGCCAA

Function

symbol description
rnf123 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF123

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12169 KPC1, RNF123; Kip1 ubiquitination-promoting complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016996 True 1571 mRNA 0.59 14 41476566 41496271

Neighbor

gene id symbol gene type direction distance location
AMCG00016997 rnf123,LOC102204603 coding upstream 11745 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 19364 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 29956 41433692 ~ 41446610 (+)
AMCG00016995 NA coding upstream 50506 41402757 ~ 41426060 (+)
AMCG00016989 NA coding upstream 1015677 40443930 ~ 40460889 (+)
AMCG00017000 NA coding downstream 162318 41658589 ~ 41670377 (+)
AMCG00017011 NA coding downstream 447278 41943549 ~ 41952515 (+)
AMCG00017010 NA coding downstream 457476 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 570601 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 598140 42094411 ~ 42100315 (+)
G17424 NA non-coding upstream 231047 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 259757 41216495 ~ 41216809 (+)
G17381 NA non-coding upstream 1191794 40268425 ~ 40284772 (+)
G17361 NA non-coding upstream 1685999 39790089 ~ 39790567 (+)
G17274 NA non-coding upstream 2396669 39079415 ~ 39079897 (+)
G17482 NA non-coding downstream 105677 41601948 ~ 41605391 (+)
G17491 NA non-coding downstream 175107 41671378 ~ 41673353 (+)
G17498 NA non-coding downstream 191739 41688010 ~ 41690199 (+)
G17514 NA non-coding downstream 217539 41713810 ~ 41716989 (+)
G17518 NA non-coding downstream 246079 41742350 ~ 41742773 (+)
AMCG00016979 NA other upstream 2222076 39239073 ~ 39254490 (+)
G17193 NA other upstream 2972934 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6272334 35158597 ~ 35204232 (+)
G16550 NA other upstream 7375703 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7376970 34093276 ~ 34099596 (+)
G17697 NA other downstream 895026 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2629943 44126214 ~ 44137931 (+)
G18192 NA other downstream 3158381 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3452763 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7875751 49372022 ~ 49382218 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021305 rnf123 coding NC_007133.7 CM002906.2 34350349 ~ 34591295 (-)