AMCG00017000


Basic Information

Item Value
gene id AMCG00017000
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 41658589 ~ 41670377 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017000
CCGTGATTAGCTGTGCGGTGCCGGGGCGCTGGAAACGGCACCCCTATCATCGGAGGCTTTACTGCTGTGGACAGCAACCAACGTACACATTCAAACTCCAGGAAGTGACGTCGAAGTAATGCCACTGCAAGGTCTTTTGTgttatatgaagaaaaaaacaagaacttcGCTTTAATTAGTCTCGTCGCTTTGTTTGTGAATGCCAACGGATTGCAGCCATGAATCTGGGggATGGTCTGAAGCTAGAACTTCATGATGGGAAACCCAAGCTCATTCTTTCAGATTATGGGTTGGAGCCCAAGAATTCAAAAAAGAACATTCACAGAACGAGGACTCAGAAATTCCCCCTGAAGTCAAATAAGCTGATTGAAGAGCCTGTGTCAGAGAAAGCACAGAGGGTCCTCCCAAAGCGCAGTGATGTGAAGAAAATGGCTCCTGAAGCAGCACTTACAAGGCAGGGCATCCAGGGGACATCAAATGCTTCAGGCAAGGCAGGAGGGGGAACACTGAAAGACAACACCTGCAAAGGGCAACCTCAGAGCACAGCTGTGGCCAGGAAGCTCTCGGCCAAGAAGTCTGAAGTACCGCAGCAGCCCTCTTCAGGAGCCCGGAAAGTACCAGTCAAGGATCTGAGGGACAGCCTGGTGTGTCTGACCCAGGAGCAACTCCAGCAGATCCTCAGCACCATCAGCCAAGCATCCAAAGGCATTTCTCAGGACCAGGATGCACAGAGCCAGCCTCTTCCAGAATCAGCAACTGACATGAAAGAAGATGGCCCTGCCACTGGAGACGCTAATGAAGAGGGCGCTGCAGGCCTACAGAATAACAGCCCCCGGCCCAGTTCTCACTTGGTGCAGCCTGACAGCCAGGGAAACGTGCCTGACACTGACAAAGACGACAGGGCAAATGGGAATGGCTTCACCTCTGGTCTCTTCAGCAACCTGGGGGAAAGAGAGCGGGAGAAGGAGACTCTGGAGGCAAAGAGGGCCCAATGGAAGAAGGAACTAGATGAACAGATGGCCCTcaagaagcagcagcagaaagcCAGCTCTGACGTCCATGTAGAATACAACCCGTGGGGCAGGCCTGGTGCTGGGGCTCCTGCTGCACTCAACTCCGGGGATGCGCTGACAACGGGTGAAGAGGAGAGGGCTGTGAAGACTGCCCCGGGCCTGGAGAACACAGTCACCCAGAGCACGGCGCAGACCTACAGCTTCAGCCACCCGGACCTGCCTGCTGCCATCCGCTCTGCCTTTGTGCTGGGGGAGGCCGCCCCGATGGAGCACGCCTTTAGTGCCCACAAGAGGGAGCAGCAGAAACAGTGGTTGCTGGAActggacagacagagggaggaaaCCAAGCTGCGCAAGATCCAGGAGAGACGCGACCACAGTCAGACTGAAGACCACGAGCGCTGGGCCATGCACTTTGATTCCTTGCAGAAAAGGACTCCTGCCCAGCTTCCCCTCAccacagagagagcagagcagcCAAGCACCTGTTCTCACGCTCAGCCACTATCGGTTAGGGGGGCTCTGTCTACGACCTGTGATGGTGCCAATCTATGGGGCGGAGATAATCTGGGCAGGGCAAGTGTGGACTCCACGACAGGACCCATACAGAAGACCGGCCATCTGCGCACCATGACAGCCCTCCTGGACCCGGTCCAGATTGAGGAAAGGGAGAGGAATAGGCTGAAACAGGTGGAGCATCAGCGGGCGATCGAGGCCCAGGTGGCGGAGAGGCAGCGGCAGCggcagagggaggaggaggcgcAGCGGGCGGAGGAGCAGAGGGAGGAGCAGCGGCTGGCCCACGAGAGGGAGCTTCTCCAACGGCAGTATGAGAGTGAAGCGCAACGCCTGAGGCAGAAAGAGgagTCACATTCCCGCAAGACGGAGGAGCTGCACCAGAGTGTGCAGAGGGCCCAGGAGGAGGCACGCCAGGCCAAGCAGCAGCAGCGCATCAGGGACCTGGCCAGGAAAGGCCACGACACCTCCCACCTGCAGCGCAGTCTGGAAGGCGCGGTGAGGGGAGAGAATGCCAGCATCGCAGCCAGCAGCCTGGCCAAAGAGGAGGTGGGAGCCCCAGGGCGAGAGAGCCTCGAGACCCCCAGTGTCGAAACTCCCAGGAAAGACACGGCAGTGCAGACTGATGTGGAAATGCCGAGCATGGGCTACAAACTCGCAGCCACTGTGGACAGAGGGCAGGCCACACAGACGCCGGATGTTCCTGTAGAGTACAGGCAGCCGAGCAGTGCAAAGAAGGCCAAGAGGGAGCCCCGACCTGCGGAGAAGAAGCCTGTGATGGGGAAGGAGAATGTGTACCAGGAGGGGGGGGACCCGTACGAAGCCTTCACGCGGACAGACAGGCGGCAGGGCCGTCCGGGGCAGCGGGGCGGGAGGAGGCCGGAGTGGAACACTAAGAAGCCCAGCAAGCCCTTCGTGCCGGCCTCTGGGCGCTATCCGCAGGGCCTGCAGCAGGAGCGGCAGGAGAGCAGGCTGCGCCGGCAGCTGGAGCTGCTCACGCTGGCGGAGAGGAATGCTGCTGCCAGGCCGACCCCCACTGTCCCCTCCTCCCCTCACCCCCCGCACAGGCTGCAGCCCCCGGCACGTAAAAAGGAAGAACCTTCCCAGAGAAAACCATCGAACCACATTGTGGCCCACACAGAAAACAGGGCGCTCTCTCCCCCAGTGCCTGCCGTGATGCACAGGCTGCACCAGCTGCAGTACCGACAGCAGAACCCTGCCCGTCCCTCTGCAAAGGCCCCCAGCGCACCCCCCCAGGACAACATGCCCACCCCAGAGCCCCCTGAACGACCTCCCTCCTCACACTTCATTCCCTACGTGCGGACAGACGAGGTGTACCAGCTGGACCCCCACGCCCCCCTGTCTCGACCCCCCACCCAGGGATCCCAGCACAAGCCACAGCCAGAGCTGCTGAAGAACAGGGACAGACAGCAGGCCATTCTCAAAGGACTGTCCGAACTGCGCCAGGGACTGctgcagaaacagagagagcTGGAGACTGGATTTAGCCCCTTACGGCTTCACCAAGAGGGGAATCCATCTCCTCCCTTCTAGCACATGACTGCTCTGTCCCTTCACCTGGAGAGCCCCTAACACAAGCACTTCATCACTTTATCACAAAAGTGTAGCCAAGGGGAATCCGAGGACAACAGGCCAAGGACAGCAACATGTTTGTACAGAGATGGACAGTCAAGAAACCCAATCAGTGTTTAAGCTATTAGAGTGTGTGTGGCGAATGCACACAGGAATGAAgctgtgtgtcttgtgtttaGAAAAGTCAAAATCCAATGTGACATTTGTTGTTGTAAATCACAGGAATGTGCTATTTATTAAGAGTGTAGACACTGTATCTAATGCAAACGTGTCAAGAACTGAGCCTTTCACACTGCTGAGCCTGGAAGTTAGTCAGGTTTGACTGTTTTTTTGTGATCAGTagaaaaagtttaaattagtgaataaatgtttttttt

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017000 True 3499 mRNA 0.57 19 41658589 41670377

Neighbor

gene id symbol gene type direction distance location
AMCG00016996 rnf123,LOC107661915,LOC107726274 coding upstream 162318 41476566 ~ 41496271 (+)
AMCG00016997 rnf123,LOC102204603 coding upstream 193768 41458372 ~ 41464821 (+)
AMCG00016998 rnf123 coding upstream 201387 41450255 ~ 41457202 (+)
AMCG00016994 NA coding upstream 211979 41433692 ~ 41446610 (+)
AMCG00016995 NA coding upstream 232529 41402757 ~ 41426060 (+)
AMCG00017011 NA coding downstream 273172 41943549 ~ 41952515 (+)
AMCG00017010 NA coding downstream 283370 41953747 ~ 41957167 (+)
AMCG00017017 slmap,slmapa coding downstream 396495 42066872 ~ 42069674 (+)
AMCG00017018 NA coding downstream 424034 42094411 ~ 42100315 (+)
AMCG00017022 flnb coding downstream 439652 42110029 ~ 42110696 (+)
G17482 NA non-coding upstream 53198 41601948 ~ 41605391 (+)
G17424 NA non-coding upstream 413070 41245302 ~ 41245519 (+)
G17419 NA non-coding upstream 441780 41216495 ~ 41216809 (+)
G17381 NA non-coding upstream 1373817 40268425 ~ 40284772 (+)
G17361 NA non-coding upstream 1868022 39790089 ~ 39790567 (+)
G17491 NA non-coding downstream 1001 41671378 ~ 41673353 (+)
G17498 NA non-coding downstream 17633 41688010 ~ 41690199 (+)
G17514 NA non-coding downstream 43433 41713810 ~ 41716989 (+)
G17518 NA non-coding downstream 71973 41742350 ~ 41742773 (+)
G17580 NA non-coding downstream 306018 41976395 ~ 41978666 (+)
AMCG00016979 NA other upstream 2404099 39239073 ~ 39254490 (+)
G17193 NA other upstream 3154957 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 6454357 35158597 ~ 35204232 (+)
G16550 NA other upstream 7557726 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 7558993 34093276 ~ 34099596 (+)
G17697 NA other downstream 720920 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 2455837 44126214 ~ 44137931 (+)
G18192 NA other downstream 2984275 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 3278657 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7701645 49372022 ~ 49382218 (+)

Expression


Co-expression Network