AMCG00017031


Basic Information

Item Value
gene id AMCG00017031
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42243601 ~ 42245029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017031
GGTCTTGTGAAATTGTGGAGTGCCCTAACATTGCTGGGATACCATCAAAACGAACTGTGCGCCTTTAGGGTCATTCAGAGATGTATTCACGTGGGAGAGAAAGCTGTGCTTACAAAGGCTTTCAGTTCAAGGGATGTGGTGATGTTTGCAGAGCTAACAGGAGACACAAACCCCATCCaccttgatgatgattatgCTAAAACAACTATTTTCAAAAGGCCGGTGGTTCACGGTGTTCTAATTAATGGGCTTATCTCAGCAGTTTTGGGGACTAAGCTGCCAGGCACTGGGTGCATATTCCTCTCTCAGGAAATTCGTTTCCCTGCTCCTTTGTATATTGGAGAAGAGGTCTTGGCTGAGGCCAAAGTGAAAAAGATCAAGAAGTCTTTTGCCTGGATTTCCGTTTCCTGCGCAGTGAAAGACAAAGTTGTCATGGAGGGGGAAGTTCTGGTCAGGTTGCCACAGGTCAAGTGTAGCAATGAGGAGACTGTAAACGCA

Function

GO: NA

KEGG:

id description
K22540 HTD2; 3-hydroxyacyl-thioester dehydratase, animal type

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017031 True 498 mRNA 0.46 2 42243601 42245029

Neighbor

gene id symbol gene type direction distance location
AMCG00017020 NA coding upstream 4314 42222768 ~ 42239287 (+)
AMCG00017019 NA coding upstream 30218 42212609 ~ 42213383 (+)
AMCG00017021 flnb,LOC107712990,LOC107657976,LOC107680511 coding upstream 33294 42156679 ~ 42210307 (+)
AMCG00017022 flnb coding upstream 132905 42110029 ~ 42110696 (+)
AMCG00017018 NA coding upstream 143286 42094411 ~ 42100315 (+)
AMCG00017025 NA coding downstream 1325 42246354 ~ 42267713 (+)
AMCG00017024 pdhb,LOC107721006,LOC107745408,LOC107593072,LOC107658396,LOC107586915 coding downstream 23860 42268889 ~ 42275683 (+)
AMCG00017033 kctd6b,kctd6,LOC107570288,LOC108436290,LOC107671957 coding downstream 44717 42289746 ~ 42290831 (+)
AMCG00017032 NA coding downstream 65024 42310053 ~ 42311207 (+)
AMCG00017026 NA coding downstream 107042 42352071 ~ 42376935 (+)
G17580 NA non-coding upstream 264935 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 500828 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 526612 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 553402 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 570248 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 808057 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 990791 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 1149264 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 1225041 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 1255141 43500170 ~ 43500476 (+)
AMCG00016979 NA other upstream 2989111 39239073 ~ 39254490 (+)
G17193 NA other upstream 3739969 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7039369 35158597 ~ 35204232 (+)
G16550 NA other upstream 8142738 34100315 ~ 34100863 (+)
AMCG00016909 mien1,LOC107566883,LOC107755209 other upstream 8144005 34093276 ~ 34099596 (+)
G17697 NA other downstream 146268 42391297 ~ 42397787 (+)
AMCG00017078 LOC106565757 other downstream 1881185 44126214 ~ 44137931 (+)
G18192 NA other downstream 2409623 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2704005 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 7126993 49372022 ~ 49382218 (+)

Expression


Co-expression Network