AMCG00017038


Basic Information

Item Value
gene id AMCG00017038
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 42715949 ~ 42719266 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017038
ATGAAGCTGTTGACCTGGGGGGTGCAGGGACAACAAGCCCTGATGGAGAAGCTGGTGGTTTTGTTAGCCTTGCTGGCCAGTGGGTCAGGAGAAAGGCAAGACCTGTCGGGGAAGGTGTTCACTTTTCCAGAGGAGTCTGCTGTGAGCTATGTGAAACTGTTTCCTGAGAAAGATGGACCTTATAATGATGTGACAGTCTGCCTTCGCTATGCCACTGACTTGCAGCGCAATTATGCTCTCTTCTCCTTGAGCACACGTGAACATGACAATggctttcttatttttaaaaatccatcTGGCCAATATAATGTATGGAGAGCTGGCAAGgaattaactttaaaacataTGGCCGAAGAAAAGGAGCTCTTGCCTTGGACTCACGTGTGCGCTACCTGGGACTCTGTCACCGGCATTGCGCAGTTGTGGGTTAACGGGAAGGGCAGTGTAAGGAAGGGGGTTAAAACTTCAGGTTCCATCCAGGCAAAGCCATTCATATTACTGGGTCAAGAACAGGACAGTTATGGGGGTAGTTTTGATAAAGGTCAGTCTTTTGTTGGCCAGATATCCAATGTCCACATGTGGGATCGTGTGCTGTCGCCCTGTGAAATATGGACTATTTATACAGGTAGAACATCTGAACCAAGTAATGTCCTGAGCTGGAAGTCGATGCAGTTTGAGATTGAGGGGTACGTGATACTGGAGAATGAAATCGTCCAGGATCTATGTATGTCCCCCAGGAACAACCCACATgatcaaatcaaaaatatacagtatggtCTGTAATAATCTTGATtagattttcaattaatttacttCTCTGTATGATTTTGCTTTCTATTCCCTTTTTACTCATTAGCTCTTAAttagtgaattaaacaaataatgaatctACCTGTACCAGGTCAATGCCTTTCTTTGATGCTTGAATGAGACATATGAACTGTGCTGGTATGTTGGCCTTTGACAATGGAATTCAAGAACACTGCTATGGGCTCATTCCATCTGAGCTGGTCTTATTGCCAGCTGTGATTTGAAGGTCCTCACTAATATTTCTCATGGCACTGTGTAGTTTGTTTGTCATCATCATTTGTTCAAGATGATCTAGAACAGGgtcattttataataaaaaggaCACATTATTGATCACAAAAGTAATGTAGACTAcctattataattatatataatataacttttttgtttgtttctgctgttCTAGTAACTCTGCTGTGCTTTGTGTTATAGAGGTGGATGGCCTTTTTCAGTGTGAAATAAATCCATGTTTgagacaa

Function

GO: NA

KEGG:

id description
K23267 APCS, SAP; serum amyloid P component

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017038 True 1289 mRNA 0.41 3 42715949 42719266

Neighbor

gene id symbol gene type direction distance location
AMCG00017034 klhdc8b,LOC106572099,LOC106566462 coding upstream 51521 42649854 ~ 42664428 (+)
AMCG00017035 klhdc8b,LOC106572099 coding upstream 85278 42623989 ~ 42630671 (+)
AMCG00017037 LOC106572099,LOC106566462 coding upstream 121855 42582352 ~ 42594094 (+)
AMCG00017023 NA coding upstream 154293 42553219 ~ 42561656 (+)
AMCG00017028 usp19 coding upstream 164184 42515426 ~ 42551765 (+)
AMCG00017039 NA coding downstream 3211 42722477 ~ 42725222 (+)
AMCG00017043 NA coding downstream 39547 42758813 ~ 42793348 (+)
AMCG00017044 NA coding downstream 76932 42796198 ~ 42809702 (+)
AMCG00017046 ift122 coding downstream 101526 42820792 ~ 42844311 (+)
AMCG00017045 NA coding downstream 126439 42845705 ~ 42849666 (+)
G17580 NA non-coding upstream 737283 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 973176 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 998960 41713810 ~ 41716989 (+)
G17498 NA non-coding upstream 1025750 41688010 ~ 41690199 (+)
G17491 NA non-coding upstream 1042596 41671378 ~ 41673353 (+)
G17882 NA non-coding downstream 333820 43053086 ~ 43112636 (+)
G17909 NA non-coding downstream 516554 43235820 ~ 43236036 (+)
G17969 NA non-coding downstream 675027 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 750804 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 780904 43500170 ~ 43500476 (+)
G17697 NA other upstream 318162 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 3461459 39239073 ~ 39254490 (+)
G17193 NA other upstream 4212317 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 7511717 35158597 ~ 35204232 (+)
G16550 NA other upstream 8615086 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 1406948 44126214 ~ 44137931 (+)
G18192 NA other downstream 1935386 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 2229768 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6652756 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6683265 49402531 ~ 49403845 (+)

Expression


Co-expression Network