AMCG00017055


Basic Information

Item Value
gene id AMCG00017055
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43317690 ~ 43319313 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017055
TGCAAGATCCCAACGCAAGCCTGTGAGTCTGGGAGAAAATATGGATTCGTTTTACTCAAATATCAGTAATTTCACTCTTGAAATGGAAGTGAGCCAAGACTTACCCAGAAACGAGAACCTAGCCAAAATTGAAATCGCACTTTTGGGCATCATATTCTTGAGCGCTGCGATTTTAAACGCCGGGCTCTTATTGCTGCTGTGGAAGAGACGCAAGCAGGTGTCCAGAATGCGCGTCTTTGTGCTTCACCTCTGCTTGGCGGACCTAGTGGTGGTTTTTTTTCAAGTGTGTCCCCAACTCATATGGGACGTTACAGACAGGTTCATCGGTCCCGACGTCTTATGCAGGCTGGTCAAGTACCTACAGGTGGTCGGTATGTTTGCATCCACCTACATGATTGTGGTGATGACCATTGACCGCTACCAGGCAATATGCAACCCCATGGTGACTTTCCAGAGGAAGAGGACGCGCTGGAACGTCCCGGTGTGCGTGGCCTGGGCCATCTCTGTGGTCGGCAGTCTCCCGCAGATCTTCATCTTTTCCCGGTTTGAAGTCGCACCGGGTGTCTTCGATTGCTGGGCTGAGTTCATCCACCCCTGGGGACTGAAGACCTACGTTACATGGACCACGCTGGTTATTTTTATCCTCCCTATCTTCACCGTGGTAGTGTGCCAGGTGAGAATCTGCAGAGCCGTCCAGATCAACCTGTTCATCAAGACGCACCAGGAGGGAGAGTCCGCCCCTGCCAACACTTTGCCTTCCAGGGCAAGCAGCGTGACCGGAGTGTCCAAAGCCAGGATCAAGACTGTGAAGATGACGGTCGTCATTGTGCTGGCCTACATCATCTGCTGGGCTCCTTTCTTCACTGTCCAACTGTGGTCCGTGTGGGATGACAACGCACCCACAGAAACTGCTACATTTACCATCTTGATGCTGCTGGCCAGTCTAAACAGCTGCACAAACCCCTGCATCTACATGCTGTTCAGTGGGAAGCTGCCCAAGAGACTGGCGGCAGTACTGTGCAGGAAGGCGTCTGACAGAAAGGACTCCATACCAGAAGAGGCGACAGTGGTCAGCACGCTCTACACGAGTTTCAAGAGCCTCTCAGACTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017055 True 1114 mRNA 0.52 2 43317690 43319313

Neighbor

gene id symbol gene type direction distance location
AMCG00017056 NA coding upstream 2739 43308695 ~ 43314951 (+)
AMCG00017054 NA coding upstream 193287 43118218 ~ 43124403 (+)
AMCG00017053 NA coding upstream 220175 43095638 ~ 43097515 (+)
AMCG00017042 NA coding upstream 465396 42850719 ~ 42852294 (+)
AMCG00017045 NA coding upstream 468024 42845705 ~ 42849666 (+)
AMCG00017066 NA coding downstream 46514 43365827 ~ 43369383 (+)
AMCG00017065 NA coding downstream 52345 43371658 ~ 43384849 (+)
AMCG00017076 lrrn1,LOC102780565 coding downstream 225341 43544654 ~ 43546804 (+)
AMCG00017073 NA coding downstream 368747 43688060 ~ 43731559 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding downstream 449545 43768858 ~ 43773452 (+)
G17909 NA non-coding upstream 81654 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 205054 43053086 ~ 43112636 (+)
G17580 NA non-coding upstream 1339024 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1574917 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1600701 41713810 ~ 41716989 (+)
G17969 NA non-coding downstream 74980 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 150757 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 180857 43500170 ~ 43500476 (+)
G18077 NA non-coding downstream 782713 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 797653 44116966 ~ 44201038 (+)
G17697 NA other upstream 919903 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4063200 39239073 ~ 39254490 (+)
G17193 NA other upstream 4814058 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8113458 35158597 ~ 35204232 (+)
G16550 NA other upstream 9216827 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 806901 44126214 ~ 44137931 (+)
G18192 NA other downstream 1335339 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1629721 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 6052709 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6083218 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_11086607_11088953 NA coding CI01000340 null 11086159 ~ 11089394 (-)