AMCG00017065


Basic Information

Item Value
gene id AMCG00017065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43371658 ~ 43384849 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017065
GTCAGTATTGATACCTACTAggctctgggaaaaaaaacaaaaaaaaacaattattgcaGAATGAGTGAGgagGAAGCAGATGAAGTTTTTCCACCGCTAAAATGTAGTGATTACAAGATTGCTGTGAGTGACTCTGTAAGTGATGGGGATTCATTCGTTTATGTGGTAAAGTCTCAGGAGCTGTCCAGCAATACAGAGTATCAAGTTGAGCGGACGTTTGAGGACTTCGAGGGGCTTCAACACTGCCTTTTCAATCAAGAAGGGGTCCCGGGGCTACAGGGAATAATAtttccacCATTGCCAGCAAAACCTTGCCCATCTCTCTCTAACTCAGATTCCAAAAGCATTAAGGTGCTGGGGCTTTTGGCTGTGGGAGAAAACTGGCCGACATACTGTCAAGCTCTTGAGAATTACCTCTGTCTCATCACAGGACACTCAATCCTCAGCAAAAACCCTGTGTTGCAACGTTTCCTCACACAGAATGAGCCACTGGCAATTCAGAGGGTAAAGAAGGGGATATTCAACTGGCTGAGCCAGGCTGTGGAGGGACTGAGAAAGGAAAATCACAAGGATATTGatgatatttttcaaaatgagagGGATAATAACCTGACGCTGACAGGACTCACCAAAGCTGTGACCGAAATATCCgtaaGACTAGCTGTGGCCTGTGGACACTTCTCCACATCACTGCAGCTGGGGATCAGCCAGCAGGAGGATCAGACAGCCCAAGAATTCTCTAAGATGTGCCTGAAGTTGTCAGAGGTGATTGATGCAGTACAGAAAAACTACGAGAGTGTGGCAGAAAATAACATCAACACAATAGGCTTGTATCTGGAACTCTATTCTCGCTATCTAGAAGCTGAAAAGGAAATGCTATTCAGAAGAACTTGTAAGCTGGTTGAAGtagaaaatgctaataaaaacctGGAGAAAGCCAAAGCAATTAAGAAAGCAACAAtggaagaaatgaaaaaggCCACTGACAAAGAATTTAAAGAGATATCAGGAATGGCCAAAATTGAGATACAAAACTTTCACCGTGAGCGGGTTCGGGCCTTCCAGCAGTCTCTGATGGGCCTGTGTGTGAGCCAGCTGAACACTGCCAGGGAGAGCTGTGCCGTATTCACTCAGCAGCTCTCGCATTTCAGGGAGCTCTGTGGGGAGTAACCAGCACGGCACGGACACATCACTGTGCCCGGTCACATACACACGGGAACACATCTTGATGGCCAGATTTCATcatggttatttaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko00260 Glycine, serine and threonine metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017065 True 1268 mRNA 0.45 14 43371658 43384849

Neighbor

gene id symbol gene type direction distance location
AMCG00017066 NA coding upstream 2275 43365827 ~ 43369383 (+)
AMCG00017055 NA coding upstream 52345 43317690 ~ 43319313 (+)
AMCG00017056 NA coding upstream 56707 43308695 ~ 43314951 (+)
AMCG00017054 NA coding upstream 247255 43118218 ~ 43124403 (+)
AMCG00017053 NA coding upstream 274143 43095638 ~ 43097515 (+)
AMCG00017076 lrrn1,LOC102780565 coding downstream 159805 43544654 ~ 43546804 (+)
AMCG00017073 NA coding downstream 303211 43688060 ~ 43731559 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding downstream 384009 43768858 ~ 43773452 (+)
AMCG00017071 LOC102304252 coding downstream 396575 43781424 ~ 43795570 (+)
AMCG00017068 NA coding downstream 422115 43806964 ~ 43814318 (+)
G17909 NA non-coding upstream 135622 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 259022 43053086 ~ 43112636 (+)
G17580 NA non-coding upstream 1392992 41976395 ~ 41978666 (+)
G17518 NA non-coding upstream 1628885 41742350 ~ 41742773 (+)
G17514 NA non-coding upstream 1654669 41713810 ~ 41716989 (+)
G17969 NA non-coding downstream 9444 43394293 ~ 43394499 (+)
G17988 NA non-coding downstream 85221 43470070 ~ 43470846 (+)
G17987 LOC107575789 non-coding downstream 115321 43500170 ~ 43500476 (+)
G18077 NA non-coding downstream 717177 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 732117 44116966 ~ 44201038 (+)
G17697 NA other upstream 973871 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4117168 39239073 ~ 39254490 (+)
G17193 NA other upstream 4868026 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8167426 35158597 ~ 35204232 (+)
G16550 NA other upstream 9270795 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 741365 44126214 ~ 44137931 (+)
G18192 NA other downstream 1269803 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1564185 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5987173 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 6017682 49402531 ~ 49403845 (+)

Expression


Co-expression Network