AMCG00017073


Basic Information

Item Value
gene id AMCG00017073
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 43688060 ~ 43731559 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017073
ACTGCCTTTTCAAACTATGTCCTATGAACAGGTATTCTGCACAGAAGCAGTTCTGGAAAGCTGCAAAACCAGGAGGGAACACTACAACGGatacagtgcttttaaataaattgcatTTGTTACACCTGAAAAGCAATAAGTATCTGACAGTTAATAAGCGCCTCCCTGCACTGCTGGAGAAGAATGCGATGCGAGTGACTCTGGATGCTGCCGGAAATGAGGGCTCCTGGTTTTACATCCAACCCTTCTACAAACTGCGCTCGATTGGAGACAGTGTGGTGATTGGAGACAAGGTGGTTTTGAATCCTGTCAATGCAGGACAGCCACTGCATGCCAGCAGTCATCAGCTGGTAGACAACCCAGGCTGCAATGAGGTTAACTCTGTAAACTGCAATACAAGCTGGAAGATCGTTCTGTTTATGAAATGGAGTGACAACAAAGAGATTATATTGAAAGGGGGGGATGTAGTGCGGCTGTTTCATGCGGAGCAGGAGAAGTTCCTGACATGTGATGATCACCGCAAGAAGCAGTACGTGTTCCTCAGGACCACCGGCCGCCAGTCTGCTACCTCGGCAACCAGCTCCAAAGCTCTGTGGGAGGTGGAGGTTGTCCAGCATGACCCATGCAGAGGTGGTGCTGGTTACTGGAACAGTCTGTTCAGGTTTAAGCACCTAGCCACTGGACACTATCTGGCTGCAGAGATGGACTCGGAGCAGGAGGCTCTCCGGGCACGGCTACGCACGGCCCAGGAGAAGGTCATGTATACCCTGGTGTCTGTGCCTGATGGAAACGACATCTCCTCCATCTTTGAGCTGGACCCCACTACGCTGAGAGGAGGAGACTCGCTTGTGCCCAGGAACTCGTACGTAAGACTGAGACATCTCTGTACTAACACATGGGTTCACAGTACCAACAACCCCATAGATAAGGATGAGGAGAAGCCCGTAATGCTTCGTATCGGCACATCTCCACTAAAAGAAGATAAAGAAGCCTTTGCCATTGTCCCAGTTTCCCCGGCTGAGGTGCGAGACCTAGACTTTGCAAACGATGCTAGCAAAGTGTTGGCCTCTATTGCTGGCAAACTTGAGAAGGGAACCATAACCCAGAATGAGAGGAGGTTTGTAACCAAGCTGTTGGAGGATTTGGTATTCTTTGTTGTGGACATTCCAAACAATGGCCAAGATGTTCTTGAGATAATGGTCAATAAGCCCAACAGGGAACGTCAGAAACTGATGAGAGAGCAAAACATCTTGAAACAGATCTTCAAGCTGCTGCAGGCACCCTTCACCGACAGCGGGGATGGGCCCATGCTGAGGCTGGAGGAGCTGGCAGACCAGCGGCATGCCCCCTTCAGGCACATCTGCAGACTGTGCTACAGAGTGCTGCGCCACTCCCAGCAGGACTACAGGAAGAACCAGGAATATATTGCGAAGCAGTTCCGCTTCATGCAGAAGCAAATTGGATACGATGTTCTGGCTGAAGACACGATAACGGCTTTGCTCCACAACAACCGCAAACTTCTGGAAAAGCACATAACCGCGGCAGAGATTGACACCTTCGTCAGTTTAGTACGAAAGAACAGGGAAcccagGTTTCTGGATTACTTGTCTGACCTGTGCGTGTCTATGAACAAATCGATTCCTGTGACCCAGGAGCTCATCTGTAATGCAGTGCTGGACCCCAACAATGCAGATATTCTCATTGAGACAAAGCTGGTGCTTTCCCGGTTTGAGATTGAGGGTATACCTATTGGAGAGAGCCCCGTGGAGTCtgaggaggatgaggaagaaGTGTGGCTCTTCTGGAAGGACAGTAACAAGGAAATCCGCAGCAAGAGCATCCGTGAGCTGGCCCAGGACGCCAAGGAGGGGCAAAAGGAGGACCAGGAGGTGGTCAGCTACTACAGGTCAGCCGCTTTTAATTCGCAGAGCCAGCTGGATGTTGACCTTATCCTGCGCTGTATGTCGGATGAGGATCTGCCCTATGACCTGCGAGCATCCTTCTGCCGCATGATGCTGCACATGCATGTGGACCGTGACCCCCAGGAACAGGTCACCCCAGTGAAGTACGCCCGTCTGTGGTCAGAGATCCCTTCCAAAATCGCCATTGACGATTATGACAACAACGGAACCTCAAAGGATGAAATCAAGGAGAGGTTTGCTCAGACAATGGAGTTTGTGGAGAATTATTTGAGAGATGTGGTTTGTCAGAACTTCCCCTTTTCGgataaggaaaaaaataaactcaccTTCGAGgttGTAAATTTAGCCAGAAACCTAATTTACTTTGGCTTCTACAACTTTAGTGATCTTTTGAGATTGACTAAAATACTGTTGGCCATATTGGACTGCGTACATGTCAGTACAATCTTTCCAATCAACAAGCTGGAAAAAGGAGATGAAGCCAAAGGGAGCAATGTCATGAGGTCAATCCATGGGGTAGGGGAGTTGATGACTCAGGTGGTCCTGAGAGGAGGGGGTTTTCTTCCCATGACCCCCAGTAACCCCCCGGATGGTGGTGATGCCAAGACGCAGACTGAGCCAGAGAAAGAAGACATCTTAGTAATGGACACCAAGCTGAAGATCATAGAAATCTTGCAGTTCATCTTAAACGTAAGGCTAGACTACAGGATCTCATGCCTCCTTTGCATCTTTAAGCGGGAGTTTGATGAGAGCAACTCCCAGACAGACATTTCAAGCACCATTCAGGATGGACTCAACAGTATGCCAGGTGCTCTTGATTTTGAACACATTGAGGAGCAGGCTGAGGGGATTTTTGGTGGAAGTGAGGAGAATACACCTTTGGACCTGGACGACCATGGTGGAAGAACCTTTCTGCGCGTCCTGCTGCACCTCACTATGCATGATTATCCACCCCTGGTGTCTGGCGCTCTGCACCTGCTCTTTAGACACTTCAGTCAGAGACAGGAGGTCCTGCAGGCCTTTAAACAGGTTCAACTACTGGTCACGAGCCAAGATGTGGACAACTACAAGCAGATCAAGTCTGACCTGGACCAGCTGCGCTCCATCGTGGAGAAGTCAGAGCTGTGGGTGTACAAGCGGCAGGGGCCCGATGAGGGTATGGACACTGGAGATGGCCCTCCCGGCGATTCAGAGCACAAGACAAAGGGTGACTCAAACGCAAGTGGTTCAGATAAAACCAAGAAACCCGAAAGCACCAGCAGCTACAACTACAGAGTGGTCAGAGAGATTCTGATCCGGCTCAGTAGGTTGTGTGTCCAGGAGGGTTCGTCGGGCAGGAAGAGTaggaagcagcagcagaggCTGCTGAGGAACATGGGAGCTCACACAGtggtgctggagctgctgcagatcCCGTACGAGAAGGGGGAAGACGTCCGCATGCAAGAGATCATGAAACTGGCTCACGAGTTTCTGCAGAACTTCTGTGCTGGGAATCAACAGAACCAGGCGCTACTTCACAAACACATTAACCTCTTTCTCAACCCAGGGATTCTGGAGGCCGTGACCATGCAGCACATCTTCATGAATAACTTCCAGCTCTGCAGCGAGATCAACGAGCGAGTGGTACAGCACTTCGTCCACTGCATTGAGACCCACGGCCGCAACGTTCAGTACCTCAAGTTCCTGCAGACCATCGTCAAGGCAGAGGGGAAGTTCATCAAAAAGTGCCAAGATATAGTCATGGCTGAGCTGGTGAATGCGGGTGAGGATGTCCTGGTCTTCTACAATGACCGCGCCTCCTTCCAGACATTGGTGCAGATGATGCGCTCAGAGAGGGACCGCATGGATGAGAACAGCCCCCTGATGTACCACATTCACCTGGTGGAGCTACTGGCTGTCTGCACTGAGGGCAAGAACGTCTATACCGAGATAAAGTGCAACTCCCTGCTCCCTCTGGATGACATTGTCAGGGTGGTGACGCATGAGGACTGCATTCCTGAAGTGAAAATCGCATACATCAACTTTCTGAATCACTGCTATGTAGACACAGAGGTGGAAATGAAGGAAATCTATACCAGTAATCACATGTGGAAACTTTTTGAGAACTTCTTGGTTGACATATGCAGGGTTTGTAACAATACGAGTGACCGGAAGCATGCTGACACCATACTGGAGCGCTATGTGACTGAGACTGTGATGAGCATCGTCACCACATTCTTCAGCTCTCCTTTCTCTGACCAGAGCACCAGCTTACAGacCCGGCAGCCAGTGTTCGTGCAGCTCCTGCAAGGTGTCTTCAGGGTTTACCACTGTAACTGGCTCATTCCAGTGCAGAAGGGGTCAGTAGAGAGCTGTATCAAAGTGCTCTCTGACGTAGCAAAAAGTCGAGCTATAGCCATCCCTGTGGATCTGGACAGCCAAGTGAATAACCTCTTCTTGAAATCTCACAACATTGTGCAGAAGACAGCCATGAGTTGGCGAATGTCTGCCCGCAATGCGGCGCGGAGGGACTCAGTGCTGGCCGCCTCCCGGGACTACAGGAACATCATAGAGAGGCTGCAGGACATTGTTTCTGCGCTGGAGGACCGGCTGCGGCCCCTGGTCCAGGCCGAACTGTCTGTGCTGGTGGATGTCCTGCACAGACCCGAGCTGCTTTTTCCCGAGAACACTGACGCCAGGAGGAAGTGTGAGAGTGGCGGCTTTATCTGCAAaCTGATAAAGCACACCAAACAGCTGCTGGAGGAGAATGAAGAAAGGCTGTGTATTAAAGTGCTGCAGACGCTGAGAGAGATGATGACTAAAGACCGAGGCTATGGGGAG

Function

GO: NA

KEGG:

id description
K04958 ITPR1; inositol 1,4,5-triphosphate receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017073 True 4745 mRNA 0.51 33 43688060 43731559

Neighbor

gene id symbol gene type direction distance location
AMCG00017076 lrrn1,LOC102780565 coding upstream 141256 43544654 ~ 43546804 (+)
AMCG00017065 NA coding upstream 303211 43371658 ~ 43384849 (+)
AMCG00017066 NA coding upstream 318677 43365827 ~ 43369383 (+)
AMCG00017055 NA coding upstream 368747 43317690 ~ 43319313 (+)
AMCG00017056 NA coding upstream 373109 43308695 ~ 43314951 (+)
AMCG00017072 itpr1,LOC102304252,LOC102779610,LOC102203222 coding downstream 37299 43768858 ~ 43773452 (+)
AMCG00017071 LOC102304252 coding downstream 49865 43781424 ~ 43795570 (+)
AMCG00017068 NA coding downstream 75405 43806964 ~ 43814318 (+)
AMCG00017069 arl8ba,arl8b,LOC107095653,LOC103137213,LOC107552649 coding downstream 93770 43825329 ~ 43841590 (+)
AMCG00017070 edem1,LOC102794187 coding downstream 111855 43843414 ~ 43855324 (+)
G17987 LOC107575789 non-coding upstream 187584 43500170 ~ 43500476 (+)
G17988 NA non-coding upstream 217214 43470070 ~ 43470846 (+)
G17969 NA non-coding upstream 293561 43394293 ~ 43394499 (+)
G17909 NA non-coding upstream 452024 43235820 ~ 43236036 (+)
G17882 NA non-coding upstream 575424 43053086 ~ 43112636 (+)
G18077 NA non-coding downstream 370467 44102026 ~ 44103399 (+)
G18084 NA non-coding downstream 385407 44116966 ~ 44201038 (+)
G18125 NA non-coding downstream 645434 44376993 ~ 44377228 (+)
G18127 NA non-coding downstream 655884 44387443 ~ 44387949 (+)
G18186 NA non-coding downstream 891808 44623367 ~ 44714164 (+)
G17697 NA other upstream 1290273 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 4433570 39239073 ~ 39254490 (+)
G17193 NA other upstream 5184428 38496051 ~ 38503632 (+)
AMCG00016934 acly,aclya,LOC103369716,LOC108273769 other upstream 8483828 35158597 ~ 35204232 (+)
G16550 NA other upstream 9587197 34100315 ~ 34100863 (+)
AMCG00017078 LOC106565757 other downstream 394655 44126214 ~ 44137931 (+)
G18192 NA other downstream 923093 44654652 ~ 44656098 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 1217475 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 5640463 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 5670972 49402531 ~ 49403845 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08710919_08824478 ITPR1 coding CI01000306 null 8709604 ~ 8824478 (-)