AMCG00017088 (LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919)


Basic Information

Item Value
gene id AMCG00017088
gene name LOC100694221,LOC104965620,LOC102796420,LOC101486183,LOC103385919
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 44656787 ~ 44658914 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017088
TTCTACACATATGCAAATGCCTAGGTTTATATATTAAACTGAACTTAAACATATACGATATACCCGAGGGACAATTGTGCGTACTCTAAAAGTAGTTCATGATCAAAAAGATAAACCAGCATGCGCTTTATTTTGTGGATTTCACACAGGCCTGTACTGATACTCGATACATGCATTAAGCACAGGCCGTTAGGATTGCATACGCATTCAAATACATGaactttcaaatctattgtttGCTGTCCTGTATACAATTATAGCGATATTTGATACTACCAGCAAATATAATAAACTGAGTGTATGCGTTTacattgcacatttattttaacttgatTTACGTAGGtatttagtgttgttttttccaacaCTTCCTCAACACAGTTTCAAGGACAGCCACAAGTCCTGCCCCTAACACCTCCCCTTTCTTGCGCAGTACCTGCCGCCGCCGTTAAGAGGCTCCAGACGGGCCGCGctggacggacggacggacggacagacgctgctgctgctgcaacaTGGCCGGGCCGGTGAAGCGGTTCTACGACCTCTCTGCCAGGATGCTGGTGACCGGGGAGACCTACAGCTTCTCGGCGCTGAAGGGCAAAGTGGTGCTGATCGAGAATGTGGCGTCTCTCTGAGGCACGACCACCAGGGATTACGCCCAGATGAACGAGCTCCAGGACCGCTACGGCGAGAAGGGGCTGGTCGTGCTGGGGGTGCCCTGCAACCAGTTCGGATATCAGGAGAATTGCAGGAATGAAGAAATCCTCAATTCTCTGAAGTATGTCCGTCCGGGAAATGGGTTTGTGCCCAACTTCCAGCTGCTGGAAAAGGTTGATGTGAATGGGAAGGATGCCCACCCCTTGTTCACGTTCTTGAAGGAGAAGCTGCCCAGCCCCAGCGATGACGCTCTGTCCCTCATGACCGATCCCAAGTTCATCGTGTGGAGCCCAGTCTGCAGGAACGACGTCTCCTGGAATTTCGAGAAGTTCCTCATTGGCCCAGATGGTGAGCCATTCAAACGATACAGCAGAAGGTTTCTCACCATTGACATCGAAGAGGACATCAAGAAGCTACTGAGCTTCGCAAAATAAACCGTCCTTGCATGCTTTCTTCGCAGAAGCACCAGTGTGGCTGGAGATTAGATTAGAGCAACCTGCATACTCtgataaatggaaaatataattaatgtgttaatcTACTCTGAATGGCTGTATACTCTTTATAAGaattttcagcatttttagTTGGCTTTCCACTGTGTAACTCTTCAGACCATATCAAAGCTGTAGTGTTATTTCTTGTCAACTTTTGCCTCTGTATGAAAGCAtgaaattgtgttttgaaaCTGGCTGTGCTCTCTTGGCAAGGTGCTGCTGCGTTTAGCCTTTACTGAATGAAGGCACCCTTTGAAACGCATGCAGAGAAGGGTGTCTGATGTATTGTTAAAGTCTAAACCTTACAGTAACACCACGCCCCTGTAAAGCACAGTCCTGTTTTCTAATGGTTTGTGGATCAATAAACATTAGACCTAACTCATTAACTTGTTTTCATCCTTTATTTATGTAGGCTATTTAAAGATTAGTCTTTCTTATGAATACTTATggtttgtgctttttattcagtaaacaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: glutathione peroxidase 1

GO: NA

KEGG:

id description
K00432 gpx, btuE, bsaA; glutathione peroxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017088 True 1647 mRNA 0.45 2 44656787 44658914

Neighbor

gene id symbol gene type direction distance location
AMCG00017084 NA coding upstream 178997 44468119 ~ 44477790 (+)
AMCG00017083 NA coding upstream 203293 44445621 ~ 44453494 (+)
AMCG00017082 NA coding upstream 245448 44388912 ~ 44411339 (+)
AMCG00017081 NA coding upstream 270801 44372888 ~ 44385986 (+)
AMCG00017080 camkv,LOC106582757 coding upstream 285279 44364606 ~ 44371508 (+)
AMCG00017090 LOC103399082 coding downstream 34069 44692983 ~ 44714100 (+)
AMCG00017096 NA coding downstream 56477 44715391 ~ 44739801 (+)
AMCG00017102 grm2,LOC106565576 coding downstream 209000 44867914 ~ 44876540 (+)
AMCG00017097 grm2,LOC105017167,LOC106565576,LOC106583186 coding downstream 222951 44881865 ~ 44891870 (+)
AMCG00017098 NA coding downstream 243552 44902466 ~ 44923634 (+)
G18127 NA non-coding upstream 268838 44387443 ~ 44387949 (+)
G18125 NA non-coding upstream 279559 44376993 ~ 44377228 (+)
G18084 NA non-coding upstream 455749 44116966 ~ 44201038 (+)
G18077 NA non-coding upstream 553388 44102026 ~ 44103399 (+)
G17987 LOC107575789 non-coding upstream 1156311 43500170 ~ 43500476 (+)
G18196 usp4 non-coding downstream 10509 44669423 ~ 44670878 (+)
G18197 NA non-coding downstream 12378 44671292 ~ 44671870 (+)
G18255 NA non-coding downstream 326882 44985796 ~ 44986081 (+)
G18302 NA non-coding downstream 584570 45243484 ~ 45243983 (+)
G18316 NA non-coding downstream 867830 45526744 ~ 45527005 (+)
G18192 NA other upstream 689 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 518856 44126214 ~ 44137931 (+)
G17697 NA other upstream 2259000 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 5402297 39239073 ~ 39254490 (+)
G17193 NA other upstream 6153155 38496051 ~ 38503632 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other downstream 290120 44949034 ~ 44961601 (+)
AMCG00017167 NA other downstream 4713108 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 4743617 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 5054553 49713467 ~ 49727567 (+)
G19113 NA other downstream 5892966 50551880 ~ 50552985 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000306_08868661_08869685 GPX1A, GPX1 coding CI01000306 null 8868182 ~ 8870046 (-)