AMCG00017128


Basic Information

Item Value
gene id AMCG00017128
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47061827 ~ 47072175 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017128
CATGGGGCTTGCTTGCTGCGACGTGGAAAGGAAGTTGATGCTGAAATATCAAAACAAGACGCTCTTGCATCAACGACGACAGGTCCTTAAAAAATGACAGACTTTCCAGCCATGTCGTGAAACTGCGGCATGATTGTACACAAACGTGGCCCTGTTTTGTAGGATAATGTAGAATAGTGGAGCTTGTCTGTGTTTGATTAACAGCGGGAGTCAGTGGAAGGGCCTAGCTGTGGAAGAAGGCAGGATAGCAACTCAGGTTACACTGGGCTTTAAATCGGTCTCGTCGGGAAGAGGATTTCCCTGTCTTTAAATGTAGAACAAGATGAGTTGGTTTAATGCCTCTCACCTGTCCAGTTTTGCTAAACAGGCTCTGACCACAGCTCAGAAATCAATTGACAGGGTTTTGGACATCAAAGAGGAAGATCAATGGGGTGAAACTGTGTTGCCGTCCTATGATGttttaccTGGAAAGACGTCTTCCTCAGGTGGGGGCTGGGGCACGATACAGTGGGACTCCCCTCCAGAGGAATGTTCTCAGACTACTCCGGTGTCTACAGAAGCTATCACCACTCCGGTCACACGGACGGTAGTGGATGAATCTGAAAACTTCTTCAGTGCCTTTTTGCAACCAGGAGATCTACAGAATGTAAAGAAAACTCAGGTGGTGTCGGTCCCCCCTACCAAATCACATAGGCTCAAGGAAGAGAAGACGGGGGATGCTGATGAGAAGACGGAGTCAGGTCCTCAACAACCAGGTCCTGTTGAACCTGGGAGGTTGGAGGGAAATGAGCCAGCAGTGAGCAAACCTGTAGACACTGAACCATTTAAGCCTGCTGTCACTGTAGATACTGGTGTCCAAAAGCCAGATCCCGAGAGCTTTGTTCTACAAAATTCCCTTAGAGAGGCGGAGTGTGTAACTGATAGAAATAGCAGTGAGGAGACATCTGATAGTACAGATGCTGTTTCAGAGGAGACAAAATCAGACGAGCCCACTTTGCCCCCGGACACCCCAGTTGAGGAGAAAGTGGTTAATGTCGGTACAGGTGAGACACTGCCTGATAGTCCTTCAAAACCTCAACCTCCTCCCTCAAAAGACATGTTGTTGGAGTCAAAAGATCCTAAATCAGAAGACAGGCAAAGCGACACACCTTCCCCACCCGTCAGTACTTTCTCTTCAGGAACCTCAACCACCAGTGACATTGAAGTGCTGGACCATGAGAGCGTCCTTAGTGAAAGCTCGGCCAGTTCCAGGCAAGAGAACGCAGACTCCAAAGCAAGCTTGCACCTGATGCAGACCTCCTTCCAGCTTTTGTCAGCCTCTGCCTGCACCGACTTCCAAAGGCTAGATGACTACCAGAAGCTCACGGAAAGCTGCAGTTCTTCGGATGCATTTGAGAGAATAGACTCCTTCAGCATGCAGTCCCTGGACAGCCGCAGTGTCAGCGAAATCAACTCGGATGATGAATTATCAGGTCGAGCCTGCACTCTGGCCTCTGTCACTACCAGCCCAACAACTCCAATTCCAGCAACTGCCGACGAGCTCAAAAGTGAAGTGGAATTTACTGAAACTATGAGGGACAGATCATTAgaggaaaatgaaatggaagaGAGTGGCCGAAGTGCAACTCCAGTGAATTGTGAACAGCCTGAAGAACTCATGCCAGCTGAAAGCCCTAGTAACAGTTCTTGCTCACTGAGTAACGTCAAGGAACTGCTTCCAGTACAAATAGTTCCTGAAGAAAATCATGTAATTTCAAGTCCTCAGATGCAAGAGCTACAAAAGgttATTGATGAACTGACAAGTAAACTTGAAAAGAGGGAGACACAGTTGTTAGCTGTAAGTAAGGATAAAGCAAGACTGGAAGAGGAATATGACAATCTTAAAGATGAAATGATCAATCTGAAGGAAGAAAGTTCCTGTGTTCAGTCTCTGAAAGAAGAGTTTACCCAGCGAATTGCAGAGGCACAAAAGAAAGCACAGGCAGCCTGCAAAGAACGAGATTCTGCGAAAAAGGATCTGAAAACACTAAAAGAAGAGCTTGCAACAAGGCTGAACTCAAATGAAACTGCTGAAATAATGAAGGAAAAAGATGAGCAAATCAGAGGCCTGCTTGAAGAAGGTGAGAAGCTTTCCAAGCAGCAACTTCACAATTCCAACATGATAAAGAAGCTGAGAGTTAAAGAAAAggagaatgaaaatgtgatCACTAAACAGAACAAGAAGCTGAAAGAGCTAGAGGAGGAGTTAAAGCATCTTCAACAGGTGTTGGATGGCAAAGAAGAGGTCGAGCGGCAGCATCGCGAAAACATCAGGAAGCTGAACGGTGTGGTCGAGAGGCAGGACAGGGAGCTGGGCAGACTGCAGACAGAACTGGAAGAGTTTCAGGAGAAGAACCGCAGCCTTCAAGCAGCGTTTGATAACTCCTACAAGGAACTTGCAGAGCTGCATAGAGCAAATGCTACAAAGGACAGCGAGGCCCAAGAAGCCGCACTAAGCCGGGAGATACAGGCCAAAGAGCAGCTCTCTGTAGCTCTGGAGATGGCTCAGGAGGAGTCCAGAACACAGCAGGAGGCTTTAGCAATCCAGATTACAGACCTGCGGTTGGCTTTACAGCGAGCTGAGCAGCAACAGGCTAGGAAGGAGGACTATCTTCGAGAAGAGATCAGCGAATTGCAGCAGAGACTTCAAGAAGCGGAAACTCGCAACCAAGAACTGAGCCAGAGTGTGACATCGGCAACAAGGCCACTGCTGCGGCAGATTGAAAACCTACAAGCTTCACTTGGGGCGCAGACCGCTTCCTGGGAAAAACTGGAGAAGAACATCTCAGATAGACTTGCGGATGCTCAGGCACAGCTGGCGGTGGCGGTGGAGAAAGAGAGATCTGCATCAGAGGGGCTTCTCACTATCAAATCCCAGCTGGCTTCCATGGAGTCCCAGGGCAGTTTGCTGCGTCAGGAGAAAGGCCGTCTGCAAGCCCTGCTGGACGCTGAGAAATTCAGGAGAGAGAAACTGGAGGCCGACAGCAGCAGGGAGCACGTAGAGCTGGAAAATTTGAAAGGCGAGTACACAAGAGCACTTGAGGATTACAGAAAGGAGAagATGCTACTGATAAATCAGTTggaaatggagaaaataaaggttgaacaagagaaaaataaatattttcttgtgCAAGAAGCACTTAAAGAAAAGGAAAGAAAAGCCTACAGTCACCCTACAGAGTCAACTGCTTCAGCCACGCCTTCCTTATCGCGGTCGAGCTCCATCAGCGGGGTGGACATGGCAGGCCTGCAGACCTCCTTTCTTTCACAGGACGATGCCCTCGATCACTCGTTTGGCACGATGAACATGTCGGCCAGTGGGAGCAACCTGTATGACGTGGTCCGTATGGGGGCAGGGTCGAGTGTCATCGAGAACCTGCAGTCTCAGTTGAAACTACGCGAAGGGGAGATCACACAGCTGCAGCTGGAAATATCAAACCTTGAAAAAACGCGGTCAGTAATGTCAGAAGAGCTGGTGAAATTGACCAACCAAAATGATGAACTGGAAGAGAAGGTGAAGGAAATCCCCAAACTCCGATCACAGCTCAGAGACCTGGATCAGAGGTACAACACCATTTTGCAGATGTACGGAGAGAAGGCAGAGGAAGCGGAAGAACTGCGGCTTGATCTAGAAGATGTGAAGATTATGTACAAAACACAGATCGATGAActtctgaaaacaaagaaatagaaatataGCCCCATTGTTGCATCTGAATTTGAAGTGTGAATTAAAACGTACAGGTTCCCTGTGCACGTACTGTATGAAGATGGAAAATGATCGTATTCGTAACTCTAAAAATAGGATCTGCGTGTTTTTGTAACCGCCCTCTCCACTAAAGCTGTTCCCTCCAAggattattgaaatgtaaaccaTTCCCCCTTCTATATCTGTATAACAGAAGAAAAGGTGAGTATGAAACtagttattaataaaattgtgaTCTGTGGAGTTTATTAAAGGATAGTAAGTTTATTCACTACGTTTTATGGCTGTTGAATTTATTTAAGAAACTTCACGTCAAATTCtggttaaatgtttatttttctcaaatggttttcctttttatttcacagCTGTCACTTTGTCAGTAATctgacactttaaaaatatttatggtGAACcgaaactatttaaaatgttttcttgggTTTTATTCCAGTTAGTACATGAGTGATCTTATTCGTTAAAAATCAGAATCTAAAAACTCTTGAAGTGCTACTCCTGCAGTTGTATAGCTTGCTTGCTGacatttcatatacatatatgtaaaattAGAAGAAATGCCTTATGTTGAAAGATTCGCATTACTGTGATAGattaatctaaaatgtaattgtaaaaataataatatatttcaagaaAGGGACCAGGCATATAATTGAAGGATATTTGAGTTTTACTTTggtctttacattttcatagtTACAACAACTGGTTTGATTATATCCCTTCTGTGCAAGTGAAAAACGTATCCGGTTGGTATCATTTGGGACTCCATTGTATTAATCAACCAGCTTGACCATAGTCCAACCCCCCCACAATGTTTCACGCTACTGATTGATCAACGCATTaaatctttcaaaaaacaaaatcttattTGATCTCTGTTATCAAAAGGATAACCTAGACCCTACGTTTAAATTGACCTAAATCTAAGATTTCCATAAAGTCTttgttaaatagttttatttattttgaatgtgtctCATCACTGTTTTTCTGGAGGTGTATGGGGTAAACTACACAAAAATACCTAACCTTAAATAACTACCCTTCTGCTGTATTTTTAGTACTTCTGattaattttgatttctttctttttctatgaTCTGGCACCATTGCCAAAGGGGAACATGCTATAGTACATTGCAATACAGCTTATacatttattactattattatttaaattgatgttaaaaaatatagagGTTGCAAATGTAACTTTTTGATATCCTTACCAGTTGTAAATTCctgtaaatatgaatgtaagAGAATTAATAGGgtacaaggaaaataaaacattttatgagcAAA

Function

GO: NA

KEGG:

id description
K20286 TMF1; TATA element modulatory factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017128 True 5080 mRNA 0.44 17 47061827 47072175

Neighbor

gene id symbol gene type direction distance location
AMCG00017130 uba3,LOC108435248 coding upstream 1241 47052398 ~ 47060586 (+)
AMCG00017127 lmod3,LOC102786770 coding upstream 17148 47040877 ~ 47044679 (+)
AMCG00017131 NA coding upstream 25086 47007135 ~ 47036741 (+)
AMCG00017124 NA coding upstream 169360 46853928 ~ 46892467 (+)
AMCG00017123 NA coding upstream 253161 46772475 ~ 46808666 (+)
AMCG00017129 LOC107655985 coding downstream 544 47072719 ~ 47083518 (+)
AMCG00017133 NA coding downstream 18194 47090369 ~ 47164242 (+)
AMCG00017134 suclg2 coding downstream 315009 47387184 ~ 47428623 (+)
AMCG00017135 suclg2,LOC106565836 coding downstream 392996 47465171 ~ 47473829 (+)
AMCG00017138 NA coding downstream 556941 47629116 ~ 47685872 (+)
G18470 NA non-coding upstream 23304 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 130932 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 141281 46918346 ~ 46920546 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 453445 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 497625 46563970 ~ 46564202 (+)
G18538 NA non-coding downstream 406803 47478978 ~ 47479256 (+)
G18582 NA non-coding downstream 782217 47854392 ~ 47854658 (+)
G18607 NA non-coding downstream 990224 48062399 ~ 48065018 (+)
G18722 NA non-coding downstream 1250088 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 2134633 49206808 ~ 49211256 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 2100226 44949034 ~ 44961601 (+)
G18192 NA other upstream 2405729 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2923896 44126214 ~ 44137931 (+)
G17697 NA other upstream 4664040 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7807337 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2299847 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2330356 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 2641292 49713467 ~ 49727567 (+)
G19113 NA other downstream 3479705 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3487275 50559450 ~ 50563278 (+)

Expression


Co-expression Network