AMCG00017129 (LOC107655985)


Basic Information

Item Value
gene id AMCG00017129
gene name LOC107655985
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 47072719 ~ 47083518 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017129
ATGGCGACTCGGTCCGACTGTTACACGAAGTTCCTGCAAGCGCAGCTGCTGACTATGCTGCTGCTGGTGGCACTGGGCATGGTCTGTGGTTACACTGTGGTTCACACAGAAGAGGACGGTCGCTCCTTCACAGCAGCCAGCCTCCACAAACCCGTACTGAACTACAGCAGCCTTGCACTACCAGAAGAGCATGTTCCTTATTTTCTCAACAATAACAAGAAGATTGCCAAAGTCTGCAAAGAGGACCCATTGTGTCCATTTAAAGAAATCCTGAAGAACACAAAATCGTGCTGGGGTTATGAGAAGAACTGTTTACCACAATACAGGTTTAGCTACCCAGTGTGCTCCAGTGTGGATTCGGGATGATATAAAGAGGATTTTATCCAGGAGGGTGAGATAGGAGGGCACTGTAGCCTCAATAAGAAGGCATTGTTATCTGAGGGACAACACAAGAGCCCTTTACAGTCATGGTTTGCAGAATTGCAAACGTATACACAGCTGAAATCTCATCCAATAGATGATGGCATTTGTGATCTGATTATCGAAAAACCTACAATTTTCATGAAATTAGATGcaggGGTCAACATGTACCATCACTTCTGTGACTTTGTAAATCTCTATATATCTCAGCACATCAACAATTCTTTCACTAAAGATGTGAAAATCATCATGTGGGATACAAGTTCGTATGGATATGGGGATTTATTTAGTGACACATGGAAAGCCTTCACTGATTATGAAGTTATTCATCTTAAAACATTTGACTCTAAAAGGGTTTGCTTCAGAGATGCCGTTTTTGCATTACTCCCTCGGATGAgatatggtttattttacaatacaccATTAATTTCTGACTGCCATGGTACAGGGTTATTCAAGGCATTCTCACAGCACGTTCTGCACCGATTGCACATCATCCAGGAAGGGCCCAAGGATCGGAAAATTCGTGTCACCCTTTTATCAAGAAGCACAGAGTATCGTAGaattttaaatcagtttgagcTGATAAAAGCACTGAAGACTGTACCTCTATTTGAGATTACTCAAGTAGATTACAAATACAAGGAGATTCCTTTCTTAGAGCAgattaaaatcacacacaactCGGACATCTTCATTGGCATGCATGGAGCTGGACTAACTCACCTGCTGTTTCTCCCGGACTGGGCTGTCATTTTTGAACTATATAACTGTCAGGATGAAAGCTGCTATCGGGACTTGGCGAGATTGCGTGGAATACATTATGTGACTTGGCAGAAAAAGGACAAAGTTATTCCTCAGGACAAGGGCCACCATCCCACACTTGGGGAACATCCAAAATTCACTAATTACAACTTTGATGTTCAGGAGTTCATGCGTATGGTTCTCCAAGCTGCGGAGCACATGCAGAAGCATCCAAAGTGGCTCTCTGAGCAAAAGCATGATGAACTGTAGAGCACAGCACAGGAAGATGGCAAACACAAGTATTCAAATAATGGAGCATTACCGTGGATGTGGTGTCATTAACTTAATGCTGAAATAGATTGCCATTCTTAATccttatctatatatatatcttgaatGCATATGTAGATGTATACACAGGCACTTATGAATGTATAGATCAATTTCACTGCCTTACAGCTGCTATTATATTTAGTTGCTGGAAATGTCTGATGTGCTGCACTGTTAGTTAGCTATGAATTAGATGTATAAAAGTATGATTTATTGTGTGAGAATGTAAGAAAGAAGATTTGCTCCCCAAGACTTTAATATATTTGAGGTCAAGTTCAGGTCAGAATTTGCTGACTTTATTTAATATGGATTTATTACTTGccctaatttattttaatgaatgtaaaagACTGAATAGAACAtagcagtattttatttatttattgcaaactgtattttgtaactgCTGCTGGGTCTATTCTCACACAGGTCTACAAGGGTTATAGTTTGCCAAGCCAGGAAAGCTGCTTTAACTTGAAAACTTCACTTGAAACCCTTgagattaatattttaacaaacaagTATTGTTGTGGATACAGTAAAGCCAATGTAGGTATTCAATTCAGACAATTAATTCAGCCTGATAAGACAGTACTGGGGAAAAAGGTAAAAATTGCAATtgtcagtatatatatatatatagtaagtaAAAGGCTCTGTGAATGGCCCTGTAGTTTTTCCACACATGCTTGTGGgttacattgttttgtgtttataggAATTCAGAATatgcaattaatttcaaaaatgCTATTAAACCAGAGACAATGTGCAAAGgaaaatactattaaataaatacttagcactttttattttattttgtataagaACTGGCACTTTGGAATATATGGGAAtaccccaccaccacctcaGTTCTAGTAAAGGTCCAAACGTTGTACATGAACCCCATATTTAGTAGTTtaagatgtttttcatttttttcagaaactCTTTAGAATTTTTCTAAAAActataaatgatttattgaGACCCATTACATCCATATGTAAGCCACATTCATTTACATATAATAGGGGCATGTTACATTATAAATTCCTTAGACATACAGTAGTcatgatacaaaacaaaatgtcattgttgtttttagtgTGAGATACTATTGTGACAATGTTTGTGGAGCTGCAATCCTCTCTAGAACAATGACGATGGCATTGTTAAACATGTTGCATAGTACAGAATAATGCTTGTATTGCAAGGTCACATTGTTCTGCCTTGATGAGTTTTAAAgtgttgattaaaataattataatgtttctgTAGTTAAACAGTTCATTatgaagaagatgaaaaatggaaatgtatcatAATGGAAGACATCTCTGTGATGACACGTCTGTATTGTTGAAGTACCGGTGCAGCTATTAGAGAGAGTTTCGATTTTGTggtcacattttatttgtacctGTTCTTTTTTAACTGTAGCAGAATGTGAGGTCCTTCAGCTTTTGTGGAATATCAGCAATCAGGACTATTTATGTTGGaccattaaaacaataaatgaccctttaaaacaaacatggttAAAGGcttcatgtatgtattatgcatgtgcatacataatacatttctaaagtGTTATGTTGAAGCATGCAGCTATAGAGGTCATGGGTTTTGGAGGgttttggcaaatgtttttgaattgtTTGTAGTCATTGTGCTCCTTTAtttatgcaaatgcaaaaatcCTTTCAAAGAcgcatttataatgtatattgcCTCTAATTAGCAGCTGCTTCTTTATTCTGTGATGTTGTGTTGCACTGTTTAACATGAACTACACTGATACACATCATGTTGCTGTTATGTAAATAtcttaaatgtatgcaaaatattgtttaaaatgctaTATACTGAGTTTGTTTAAACTTTTATAAACCAaatgtgcattgttttaaaagtcTGCATTCTGTCTGACTCCACAGAAACATGACAACttgagtattttaaaaatgtattttctaaatcaaGGTCAGAGTTATTTCAGTAGATATTTTTCTAAATTTTCATTCTACTTCAAGCTGGGAGAAGTCATTGGCACTCCTTTTATACTTGAATTCGAGATGATTTTAAGTTTAACTAATATATACCGTtgtttctaaaaatacatattttgtttcattctttgaaacatgatttttttaaatacatgtaacttATGAGTCAcacaattgtatatattttaagtttttcaaaatgtatgttctAA

Function

NR:

description
PREDICTED: EGF domain-specific O-linked N-acetylglucosamine transferase-like

GO: NA

KEGG:

id description
K18134 EOGT; EGF domain-specific O-GlcNAc transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017129 True 3721 mRNA 0.36 15 47072719 47083518

Neighbor

gene id symbol gene type direction distance location
AMCG00017128 NA coding upstream 544 47061827 ~ 47072175 (+)
AMCG00017130 uba3,LOC108435248 coding upstream 12133 47052398 ~ 47060586 (+)
AMCG00017127 lmod3,LOC102786770 coding upstream 28040 47040877 ~ 47044679 (+)
AMCG00017131 NA coding upstream 35978 47007135 ~ 47036741 (+)
AMCG00017124 NA coding upstream 180252 46853928 ~ 46892467 (+)
AMCG00017133 NA coding downstream 6851 47090369 ~ 47164242 (+)
AMCG00017134 suclg2 coding downstream 303666 47387184 ~ 47428623 (+)
AMCG00017135 suclg2,LOC106565836 coding downstream 381653 47465171 ~ 47473829 (+)
AMCG00017138 NA coding downstream 545598 47629116 ~ 47685872 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding downstream 820164 47903682 ~ 47950784 (+)
G18470 NA non-coding upstream 34196 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 141824 46930581 ~ 46930895 (+)
G18462 NA non-coding upstream 152173 46918346 ~ 46920546 (+)
G18430 gpr27,LOC106582853,LOC107713489,LOC107599437,LOC106565734 non-coding upstream 464337 46605530 ~ 46608382 (+)
G18420 NA non-coding upstream 508517 46563970 ~ 46564202 (+)
G18538 NA non-coding downstream 395460 47478978 ~ 47479256 (+)
G18582 NA non-coding downstream 770874 47854392 ~ 47854658 (+)
G18607 NA non-coding downstream 978881 48062399 ~ 48065018 (+)
G18722 NA non-coding downstream 1238745 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 2123290 49206808 ~ 49211256 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 2111118 44949034 ~ 44961601 (+)
G18192 NA other upstream 2416621 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 2934788 44126214 ~ 44137931 (+)
G17697 NA other upstream 4674932 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 7818229 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 2288504 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 2319013 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 2629949 49713467 ~ 49727567 (+)
G19113 NA other downstream 3468362 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 3475932 50559450 ~ 50563278 (+)

Expression


Co-expression Network