AMCG00017143


Basic Information

Item Value
gene id AMCG00017143
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48133618 ~ 48143478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017143
AACATTAAACTCAAAAATGGGTCTCTCGCTCTCCACAGGAAGATTTGCCTTCACTGTAAGTGCCCGCGGGAGGAGCATGTTGTGGCAGTGATGCCTTTAGAAATGGAGAAGACGGTGAATAAACTGATGTACGACTTCCAGAGGAACTCCACGTCCGACGACGACTCTGGCTGTGCCCTGGAGGAGTACGCCTGGGTTCCCCCAGGGCTAAAACCAGAACAGGTGCACCAGTATTACAGCTGCCTTCCTGAGGACAAGGTGCCCTATGTTAACAGCCCTGGAGAAAAGTACAGAATCAAACAGCTTCTTCATCAGTTGCCTCCACACGACAATGAGGCAAGTGTTCCCTATTACCAGGACCCCgtcCGGTATTGTAACACTTTGGATGACGAAGAGAAAAGGGAGCTGAAACTCTTCAGCAATCAGAGGAAAAGGGAGAATCTGGGACGGGGCAATGTGAGACCTTTTCCTGTGACAATGACTGGCGCGATCTGTGAACAGTGTGGTGGGCAGATTAATGGAGGAGATATCGCAGTCTTTGCCTCACGCGCGGGCCATGGCGTCTGCTGGCATCCTCACTGTTTTGTATGCAGCATATGTGACGAGCTCCTGGTAGATCTAATTTATTTCTATCAAGATGGGAAGATATACTGTGGCAGGCACCATGCTGAGCGCCTCAAACCCAGATGTGCAGCTTGTGACGAGATCATTTTCGCGGATGAGTGCACGGAAGCAGAAGGAAGACATTGGCACATGAAGCAtttctgctgttttgaatgTGAGACTGTTCTGGGCGGCCAGCGGTACATTATGAAAGAGGGAAGGCCATACTGCTGCAATTGCTTTGAGTCTTTGTACGCAGAGTACTGTGACTCGTGTGGTGAACACATAGGTATTGATCAAGGCCAAATGACTTACGATGGTCAGCACTGGCATGCCACCGAAACCTGTTTCTGCTGCGCGCGCTGTAAGAACTCGCTGTTGGGCCGTCCATTTCTTCCCAAACAAGGACAGATCTTTTGCTCCCGGTCCTGCAGCGTAGGAGAAGATCCCAACGGATCCGACTCCTCCGACTCCGCCTTCCAAAGTGCAAGATCACGGGAATCGCGTCGCAGTGCGAAAATAGGAAAGAATAATGGGAAATCTGACGCCAGGAAATCAATGCAGTTACTTTCAACTTCCAACAGGTTTTCAACAGATATCGACCCTCTTTCATTGCAAATGGATTTGCTCAGTCTTTCCAGCCAGGCACCCAGCTTGAGCAGGGATCACCAGCATGTTTGGAAGAGCAGGGAAGAGCTCTACCAGTATGACGGCAAGGCCGAGCAAACCCACAGCCCTCTCCAACTGCTCAGCCAGTGTAACGTGAGAACGGCCTATAACCCCGTACAGAGTCCTGGGAATCAGCCAGAGGCATGGGCAAAGGAGCACAATGCTTCAAAGAGGGCCTCCACTTCAGCTCTGAAGGGACATGCTGATAACTGGATTCATGAGAGCAAAGATGGCTATTTTCCACCAAAGCTGAAGACACAGAGTAGTTTTGGTGATGTTTCCAAGCGTGCTTTTTCAGAGAAAAGAACTGTGAGTCTCCAAAGGTATGAGAGAGACCTGGAAGTTGGGCCCCAACAGGGCCGGACAAGGAATCCAATCAATGCACTTAGCTTTAGTGAGCAACTTACACCGATGGAACAAACTCCAAGAGGATCAATGGAATCCCTGGCTCTGTCCAATGCAACAgGAACATCAGCAGATGGGGGCACCAAACGACAGGAGCATTTGTCCAGGTTTTCGATGCCTGATTTAAGCAAAGATTCTGGCATGAATGTATCGGAAAAGAGCAACATGGGCACTCTGAACTCCTCAGTCCAGTTTAGGAGCACTGAATCACTAAGGAGCTTAAACTCTGTCCAGCCATACCAGGACATGGAGCCACCTGTTGAGAGACTAAAGTACCCCTTGCAGTACAGGGAATCTCCTGCTTTAGCCAGGCTTCCACAGGGATTTACCTTTGAGGACGAAGACCCGGTTAACATGGCAAGCAGTGCAAACAACACCAGACTGCCCCCCATGAGTGAAAGGACTCGAAGACGCATGAACGGACAAGACGAGAATCACCGacgccaccaccaccatcaccgCTCTCGCAGGTCCCGTCGTTCGCGCTCCGAGAACGCACTGCACCTCGCGGCCGAGAGACGCACCCAAGTGAGGGACAGGCCACAGCTGCACATCCGGGAAGACTACGACCAATTCGCGATCCCCAGAGGAGGGAGAGATTCATTCGGGAGCGGTTACAAAAGAGAAGCGTTCAGGCAGTGTCCCAGGACCACATCCGACTTGACACTTCAGAACCCAATGAACCATCGGCTGGGGCCTTACTTTGACGACTACGATGACGACGACTGGTGCTCCACCTGCTCTTCCTCGTCAGAGTCGGAGGATGAAGGGTACTTCCTGGGAGAGCCCATTCCCAGGCCCGTCCAGCTCCGCTATCTCACCAGCGATGAACTCCTGCACAAGTACGGCTCTTCCGGCCTCGCTGGCTCCACCACTCTGGGGAGCCGAGGGCAGCTGCACACCCGCAAACGGAGAAAAAGCAAGAACTGCATCATTTCCTAACACTGAAGTGCAAGACTAAGCCAGTGAGAGAATGTTAACTTGCACAATTGCACTCCTGCAATCTTGGGATTGTTTGTAAAGAATCCtataaaactaatatttaatCTAAGcagaaaacaaccacagaaacAAGCCCTATTAGTATTGTAAGGTCTACATTGAGTTTCGTAACCGTTGACAGCACAAACGTTTTGCATGTTTACCATTTACTGTTCcaaattgtatatgtttttcttctaaCATTTTCTTGCACAACTTAAAAACTGCCAACACttaatcaaagaaaatgtacaatagcaatatgttgttttttattctgttcagcCACCGTAAAGTTCAGTAAAATTCTGCCTTTTTGCAACGTATTTGGGTTTAACTAGTTagcatattaatttaattctataaaatgtatatacataaattcACTAAGTTAATGACATTAGTGTACATATGATGTAAATGAGGtactacatatttttatattttgtattgatagaagcatttatgtattatataatgtagCTATAGAACAAAACACATGCATGTTCATTTGCTGACCTTGTCTTGAATGGGAATTAAACAGTATTTC

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04511 PRICKLE; prickle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017143 True 3208 mRNA 0.48 7 48133618 48143478

Neighbor

gene id symbol gene type direction distance location
AMCG00017142 NA coding upstream 71391 48012012 ~ 48062227 (+)
AMCG00017140 magi1,magi1b,LOC107728617,LOC107553826 coding upstream 182834 47903682 ~ 47950784 (+)
AMCG00017138 NA coding upstream 447746 47629116 ~ 47685872 (+)
AMCG00017135 suclg2,LOC106565836 coding upstream 659789 47465171 ~ 47473829 (+)
AMCG00017134 suclg2 coding upstream 704995 47387184 ~ 47428623 (+)
AMCG00017144 psmd6 coding downstream 26818 48170296 ~ 48173353 (+)
AMCG00017147 thoc7 coding downstream 69175 48212653 ~ 48216163 (+)
AMCG00017154 NA coding downstream 208918 48352396 ~ 48352746 (+)
AMCG00017156 cadps,LOC106582941,LOC106565849 coding downstream 217870 48361348 ~ 48447697 (+)
AMCG00017155 LOC108271493 coding downstream 312017 48455495 ~ 48460635 (+)
G18607 NA non-coding upstream 68600 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 278960 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 654362 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 1095095 47028787 ~ 47038523 (+)
G18464 NA non-coding upstream 1202723 46930581 ~ 46930895 (+)
G18722 NA non-coding downstream 178785 48322263 ~ 48326805 (+)
G18791 NA non-coding downstream 1063330 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 1292786 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1438786 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 1529607 49673085 ~ 49673926 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3172017 44949034 ~ 44961601 (+)
G18192 NA other upstream 3477520 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 3995687 44126214 ~ 44137931 (+)
G17697 NA other upstream 5735831 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 8879128 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 1228544 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 1259053 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1569989 49713467 ~ 49727567 (+)
G19113 NA other downstream 2408402 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2415972 50559450 ~ 50563278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000050_05362253_05376134 PRICKLE3 coding CI01000050 null 5362253 ~ 5377514 (+)