AMCG00017156 (cadps,LOC106582941,LOC106565849)


Basic Information

Item Value
gene id AMCG00017156
gene name cadps,LOC106582941,LOC106565849
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 48361348 ~ 48447697 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017156
acaaaaaaaatcaaagttGGTGGAAAGCGATTcacctcgtcctcgtcctcctcctcgtcgtcctcgtcctcgtcctcgtcctcgtctTCTCAGGCCTCTGACTTAGATAACGCTTCACAAACCAAAGACTCGAAAATAAGCAAACAACAACTTCAGACGGTGAAAGATCGATTCCAGGCCTTCCTGAATGGGGAGACTCAGATTGTAGCAGACGAGGCGTTCATCAATGCTGTGTTTCTCAAGAGTGACCGCGTGTCCCGGATGGTGCAGAGCGGGGGCTGCTCGGCCAACGACTCCAGGGAAGTGTTCAAGAAGCACATCGAGAAGAGAGTGCGCAGCTTGCCCGAGATCGACGGCCTCAGCAAGGAGACGGTGCTGAGCTCCTGGATGGCAAAGTTTGACGCTATCTATCGAGGAGAGGAAGACCCTCGCAAACAGCAAGCTCGGATGACGGCGAGCGCGGCCTCGGAGCTCATTCTGAGCAAGGAGCAGCTGTACGAGATGTTTCAACAGATCCTCGGAATAAAGAAGTTTGAGCATCAGCTGCTGTACAATGCCTGTCAGCTGGATAATCCAGATGAACAAGCAGCACAAATTAGAAGAGAGCTCGATGGACGTCTTCAAATGGCAGATCAGATTGCGCGAGAGCGCAAGTTTCCAAAGTTTGTGTCGAAAGAGATGGAGAACATGTTCATCGAGGAGCTGAAGTCCTCTGTGAATCTGCTCATGGCCAATCTGGAGAGCATGCCCGTGTCCAAAGGAGGATCGGAATTCAAGCTCCAGAAATTGAAGCGTAGTCACAACACCTCGATCATTGACATGGGGGAGGAGAATGAAAACCAGCTCTCTAAATCAGATGTTGTCCTGTCCTTCACTCTAGAGGTAGTGATAATGGAAGTTCAGGGTTTGAAGTCTTTGGCTCCTAACCGTATCGTTTACTGTACGATGGAAGTTGAAGGAGGAGAAAAATTGCAAACTGATCAAGCTGAAGCCTCCAAGCCAACctGGGGAACTCAAGGTGACTTCACCACGACACACCCGCTCCCGGCAGTGAAGGTGAAGCTGTTCACCGAGAGCACCGGAGTGCTGGCCCTGGAAGACAAGGAACTGGGACGGGTTGTCTTGCATCCAACACCCAACAGCCCCAAACAATCCGAGTTACACAAAATGACTGTTTCTAAAAATTGCCCTGATCATGATCTGAAAATCAAGCTTGCCATTCGTATGGATAAACCACAGAATATGAAACATTCTGGGTATCTATGGGCAATTGGAAAAAATGTTTGGAAGAGATGGAAGAAAAGGTTCTTTGTCCTGGTGCAGGTCAGTCAGTATACCTTTGCTATGTGCAGTTACAGGGAGAAGAAAGCCGAGCCCCAAGAGCTGTTACAGCTTGATGGATACACTGTGGACTACACGGACCCACAGCCAGGTTTGGAAGGTGGCAGAGCTTTCTTCAACGCCGTGAAGGAAGGAGACACTGTGATCTTTGCCAGCGACGACGAGCAGGACCGCATTCTGTGGGTGCAGGCGATGTATCGTGCCACTGGCCAGTCGCACAAACCAGTGCCGCCCACCCAGGTTCAGAAACTCAATGCTAAGGGAGGAAATGCCCCTCAGCTGGACGCTCCCATTTCCCAGTTTTATGCAGACAGAGCTCAAAAACATGGAATGGATGAATTTATCTCAGCTAATCCCTGTAACTTTGACCACGCTTCACTTTTCGAGATGGGCTGGTTCAGTCCAGGCCAGGTGTTTGTTCTCGATGAGTACTGCGCCCGCAATGGCGTACGAGGTTGTCATAGACATCTATGCTACCTGAATGACTTGCTTGAAAGAGCAGAAAACGGAGCCATGATTGACCCGACTCTACTGCATTACAGCTTTGCTTTTTGTGCTTCGCACGTACATGGGAACAGTCAGAAAATGCCAGATTTACTTGGTGGGCCACATAATACAGAGGCTGAAGGGGACAAATCACAGAGCCCCTCAGTCACTGAGCCCGAGGCTAACTCAAAAAAGGATTTCAAAAAggattctaaaaaaaaaaaggattccaAATCTCAACAAGCCCCAGAGCCAAAAAGGCCTGATGGAATAGGAACAGTAACCGTTGAGGAGAAAGAGCGCTTCGAGGAGATCAAAGAACGGTTGCGTTTACTTCTTGAAAACCAGATAACACATTTCAGCATCTACACACCATATAAAAATTACCGTTGCTGCATGTTTAAGTATTGCTTCCCGTTTGGCCGACCTGAAGGTGCATTAAAAGCTACTCTGTCTTTACTAGAAAGGGTTCTTATGAAGGATATAGTAACACCAGTTCCACAAGAGGAAGTGAAAACTGTTATCCGCAAATGTCTCGAACAAGCTGCATTGGTCAACTATACCCGGCTATCTGAGTATGCCAAAGTTGAagggaaaaagagagaaatgtatGAACATCCTGTCTTCTGCTTGGCCTCTCAAGTGATGGATTTAACCATTCTAGCAGTGCCTAAAATCACAAGCCATGTATCACGTAATATTGTCTTGCAGGAATTGAGATCTTCTCGTTTTATTAACCATATCCCTTCTACTTCAGAAAATGTAGGCCGCTTAGTCACACCAGCCAAAAAACTAGAAGATACTATTCGTCTCGCCGAATTGGTTATTGAAGTTCTTCAGCAAAATGAGGAGCACCACGCTGAGGCCTTTGCGTGGTGGTCAGATCTGATGGTAGAGCATGCCGAGACCTTCTTGTCCCTTTTCGCAGTGGATATGGATGCTGCTTTGGAGGTTCAGCCCCCGGACAGCTGGGACAGCTTCCCTCTATTCCAACTGCTGAACGACTTTCTTAGAACCGACTATAATCTGTGTAATGGAAAATTCCACAAACACCTTCAAGATCTGTTTGCTCCCCTTGTGGTTAGATATGTCGACCTGATGGAGTCATCAATTGCACAGTCAATTCATAGGGGCTTTGAACGGGAGTCGTGGGAACCTGTAAACAATGGATCTGGCACCTCTGAAGATCTCTTCTGGAAGCTTGATGCTCTGCAGACCTTCATTCGAGACCTCCACTGGCCCGAAGAAGAGTTTGCCAAACACCTGGAGAGCCGTTTAAAGCTCATGTCCAGTGATATGATTGAGTCATGTGTGAAAAGAACAAGGATTGCTTTTGAAGCGAAGCTGCAGAAAACCAGCCGGACAACAGATTTCCGTGTCCCACAGTCAATATGTACAATGTTTAATGTGATGGTAGATGCCAAGGCTCAATCTGCAAAACTCTGCAGCATGGAAATGGGCCAAGAGAGACAGTACCACTCCCAAATAGACAATCTCATTGAAGAAACTGTCAAAGAAATGATAACCCTCCTGGTTGCAAAGTTTGTTATCATACTGGAGAGTGTCCTGGCTAAATTATCAAGATATGACGAGGGGACTCTGTTTTCGTCATTCCTGTCCTTTACAGTGAAAGCAGCCTCAAAGTATGTGGATGTACCTAAACCCGGGATGGATGTAGCAGATGGCTATGTGACCTTTGTGCGCCACTCTCAGGATATCCTACGTGACAAGGTCAATGAGGAGATGTATATAGAAAGGTTATTTGATGTAAGTAAATGCCTTCTCCTCCTATTCAGGGAGGAGACCATccaaaatgtgacaaaacaatATGCAGAGGGA

Function

symbol description
cadps Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity and protein kinase binding activity. Predicted to be involved in positive regulation of exocytosis and presynaptic dense core vesicle exocytosis. Predicted to act upstream of or within catecholamine secretion; synaptic vesicle priming; and vesicle organization. Predicted to be located in dense core granule. Predicted to be active in glutamatergic synapse and presynapse. Predicted to be extrinsic component of neuronal dense core vesicle membrane.

NR:

description
PREDICTED: calcium-dependent secretion activator 1-like

GO: NA

KEGG:

id description
K19933 CADPS; calcium-dependent secretion activator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017156 True 3666 mRNA 0.47 28 48361348 48447697

Neighbor

gene id symbol gene type direction distance location
AMCG00017154 NA coding upstream 8602 48352396 ~ 48352746 (+)
AMCG00017147 thoc7 coding upstream 145185 48212653 ~ 48216163 (+)
AMCG00017144 psmd6 coding upstream 187995 48170296 ~ 48173353 (+)
AMCG00017143 NA coding upstream 217870 48133618 ~ 48143478 (+)
AMCG00017142 NA coding upstream 299121 48012012 ~ 48062227 (+)
AMCG00017155 LOC108271493 coding downstream 7798 48455495 ~ 48460635 (+)
AMCG00017157 NA coding downstream 27671 48475368 ~ 48476484 (+)
AMCG00017161 NA coding downstream 337471 48785168 ~ 49023630 (+)
AMCG00017165 NA coding downstream 693902 49141599 ~ 49204142 (+)
AMCG00017163 NA coding downstream 764160 49211857 ~ 49221883 (+)
G18722 NA non-coding upstream 34543 48322263 ~ 48326805 (+)
G18607 NA non-coding upstream 296330 48062399 ~ 48065018 (+)
G18582 NA non-coding upstream 506690 47854392 ~ 47854658 (+)
G18538 NA non-coding upstream 882092 47478978 ~ 47479256 (+)
G18470 NA non-coding upstream 1322825 47028787 ~ 47038523 (+)
G18791 NA non-coding downstream 759111 49206808 ~ 49211256 (+)
G18865 NA non-coding downstream 988567 49436264 ~ 49493349 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding downstream 1134567 49582264 ~ 49670289 (+)
G18909 NA non-coding downstream 1225388 49673085 ~ 49673926 (+)
G19040 NA non-coding downstream 1706661 50154358 ~ 50154694 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 3399747 44949034 ~ 44961601 (+)
G18192 NA other upstream 3705250 44654652 ~ 44656098 (+)
AMCG00017078 LOC106565757 other upstream 4223417 44126214 ~ 44137931 (+)
G17697 NA other upstream 5963561 42391297 ~ 42397787 (+)
AMCG00016979 NA other upstream 9106858 39239073 ~ 39254490 (+)
AMCG00017167 NA other downstream 924325 49372022 ~ 49382218 (+)
AMCG00017173 NA other downstream 954834 49402531 ~ 49403845 (+)
AMCG00017183 NA other downstream 1265770 49713467 ~ 49727567 (+)
G19113 NA other downstream 2104183 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 2111753 50559450 ~ 50563278 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003401 cadpsa coding NC_007122.7 CM002895.2 19780717 ~ 20040154 (+)