AMCG00017188


Basic Information

Item Value
gene id AMCG00017188
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49790879 ~ 49796155 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017188
TTTTAATCTAGCCCCGAAATTGCTTTAGCGGCAGTGTACACAAAGAAAAGTAGTGCCGATTCCAGACGAGGAGCACTGCCTCCTATCTACCCCAGGAGCAAACAGTTAACCTTCAAGGATCAGACAGAGTCCTAGGAATCTGTCTTCAATTGGAAGAAACAAAGACGAagacaacatcaacaaaactaACAGgAGAAATAAAGTTAATTGAACCATGGGAATTCTAAATCATTGGTCAGTTCTCATGCTTCTACTTGGGGCAGAAGTGATGTATCAGCAGGATTATGATGAGCCTTATGATTCATATGATTTTGAACCCGAGGTACCACCCGATATAGAACCACCTGCTTTTCCCCATCATACCGATTATGTTAATGTATACGTCCCATATCCAAATGAGTGTGCCAGGGAATGCTTCTGCCCACCGTCCTATCCTTTTGCGATGTACTGTGAGAATCGGAAGCTGAAAACCATTCCCGATATTCCTCAGCACATCCGTCACCTCTATATTCAGTTCAACGAAATTGAAGCGGTGAACGCAAAAGCCTTTGTCAACGCTACGTCTCTCAGAGATATCAACCTGAGCCATAACCACATCAAATCCTCCATGGTAGACCGTGGTGTATTTGGCAAGCTCAAGAATCTCATCCAACTTCATTTAGATTACAACAACCTGGAAGAAGTACCTGCCCCTTTGCCAAATACTCTCGAACGACTTTTCCTCGGGTTCAACAAGATCTCCAAGCTGTCTGCAGATGCTCTGCAAGACCTGGCCAAAGTGACCATGCTTGATCTCTGTAATAACAAGCTCACAGATGCAGCAGTCAAGGGAAAAATCCTGTCGGGCATGAAGAGCCTCATGCAAATAAACCTGTGCAACAACAGGTTGAAATCCATGCCTTCAGATCTCCCAGCTTCCTTACTGCAACTGTCTTTGGAGAACAACTCCATCTCTTCTATCCCTGAAGGCTACTTTAAGAAAACGCCAAATCTCATGTCCCTCAGGATTTCCCACAACAAGCTGAAGACTGTGCCCTTCAAAGTTTTCAACCTGTCTAGTCTGATGGAGCTCAACCTTGGTCACAATCAGTTGTCCAAAGCCTTCTTTATTCCAAGAGCCCTGGAGCACCTGTATCTCAATCACAATGAGTTTCTTGATCTCAACGTTTCCCTCCTGTGTCCTACCATCCAACCGACATCACCCAATTTGCTGACCTACATTCGCATTGATCACAACAAGCTGAGAGTCCCTATAAACACCTACATCTACTTGTGCTTTCCTCGGATCCAGAACATTTTCTATGGTGAACAGAGAGTTGATGACAACTACCTCCCGCCTCCAGTTATTCAACCATCGCGTCCTCGTTCTAGAGGAAATGTACCAGATGAGACCCAATTCGAACCATCTGACTAGACcataaatttaaaataactggaaCATGTAAATACTACATTGTGAAAAGAtggtataaaaaatacattagctATTATCAAATCAACTAAGTATTTACCCAGACTGATTTCTTTATTGTACACAGGGTAATTTCATTCTTCTTCAGAAGATGGCAGATGATGTGGAGTTCTGCACATGTATCAGATAAACTAGCCAGTAATGCATGAGAGAACAGATTGTTTGTTCTGCATAGTTGAATGTGTTAATAACATAGCAGGCATGCATGGCTGAATAGCACAACTTAGTTGGAAAGTATCTATTCAAGTTCATTAATTGTGTAAGCTAAGTTTCCTCCTGTTTAACAACTGAAATGATTGATCAGTGGAGCTGGTGGAAACAGAGACATGATTTCCCCAAGTATACACAGTCAGGAGCATTTTCTTTCCCAACTACCTTTCTCCTATGCATAATAGCAAAATACCTTAATTACTTACCATTTGTTAGTCTGCAGGCATACATACTTAACCTTAACTTAAGTTCATATAAAAAGCAGAagatacataataaaaaaaatgtacacattgtCAACATACTGATTACTTAACAAAGGTTAGCAACTGACaatatggtaaaataataaattatgtaattcttttgtctttctttaaacCAGTAAACAAtggttacttatttatttgtccaGTGTCAACTTTGTTATTTCTCATATtaacatagtaataataataaag

Function

GO: NA

KEGG:

id description
K08124 OMD; osteomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017188 True 2142 mRNA 0.40 3 49790879 49796155

Neighbor

gene id symbol gene type direction distance location
AMCG00017185 NA coding upstream 9981 49768960 ~ 49780898 (+)
AMCG00017184 NA coding upstream 25687 49748843 ~ 49765192 (+)
AMCG00017182 LOC105893506,LOC108431510 coding upstream 81800 49707535 ~ 49709079 (+)
AMCG00017181 NA coding upstream 93031 49678164 ~ 49697848 (+)
AMCG00017176 tnnc1,LOC106571909,LOC108232086 coding upstream 308459 49481225 ~ 49482420 (+)
AMCG00017189 NA coding downstream 9672 49805827 ~ 49811967 (+)
AMCG00017190 NA coding downstream 25578 49821733 ~ 49831079 (+)
AMCG00017192 iars coding downstream 55143 49851298 ~ 49905581 (+)
AMCG00017195 LOC107697566 coding downstream 197207 49993362 ~ 49997451 (+)
AMCG00017194 atp2b2,LOC107561799 coding downstream 215777 50011932 ~ 50031382 (+)
G18909 NA non-coding upstream 116953 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 120590 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 297530 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 579623 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1464074 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 358203 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 359298 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 536311 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 537605 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 545262 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 63312 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 387034 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 408661 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 4829278 44949034 ~ 44961601 (+)
G18192 NA other upstream 5134781 44654652 ~ 44656098 (+)
G19113 NA other downstream 755725 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 763295 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 3018098 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 3024906 52821061 ~ 52834042 (+)
G19683 NA other downstream 3539754 53335909 ~ 53339655 (+)

Expression


Co-expression Network