AMCG00017194 (atp2b2,LOC107561799)


Basic Information

Item Value
gene id AMCG00017194
gene name atp2b2,LOC107561799
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50011932 ~ 50031382 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017194
TTGCCTGGAATCGCAGCAGACCTAGACAAGAGAAAAGAAGTCTATGGGCAAAACTTTATACCTCCAAAGAAGCCAAAAACTTTCTTACAGTTAGTCTGGGAAGCACTACAAGATGTGACTCTTATTATCTTAGAAATTGCAGCCATTATTTCTTTGGGACTTTCATTTTATAAGCCTCCTGGTGAGGGGATTGAGGCATGTGGGACCGTTGCAGCTGGAGCTGAGGACGAGGGAGAGGCCGAAGCCGGATGGATTGAAGGCGCAGCAATTCTACTCTCCGTTTTCTGTGTTGTCATTGTTACTGCCTTTAACGACTGGAGCAAGGAAAAGCAGTTCAGGGGTTTACAGAGCCGCATtgaacaggaacaaaaattCACCATTGTCCGGGGTGGCCAAGTTATCCAGACGCCCGTAGCGGAAATAGTTGTCGGTGACATTGCACAAATCAAATACGgagACCTACTTCCAGCTGATGGCGTTTTGATACAGGGGAATGATCTGAAGATTGATGAAAGCTCTTTGACTGGAGAATCAGACCATGTACGCAAATCTGCAGACAAAGACCCCATGCTCCTCTCTGGTACTCATGTCATGGAGGGCTCAGGGAGAATGGTGGTCACTGCGGTGGGAGTTAATTCCCAAACTGGCATCATCTTCACTCTGCTGGGAGCTGGcggtgaggaggaggagaaaaaagagaagaaagTCAAGAAGCAAGACGGTGCCGCAGCAATGGAGATGCAACCGTTAAAGAGTGACGAAGGAGGGGACGGAGAtgagaaagagaagaagaaaaccaACATGCCCAAGAAAGAGAAATCTGTCCTTCAGGGCAAACTGACTAAATTAGCTGTACAGATTGGTAAAGCGGGTTTGGTAATGTCCGCTATTACAGTCATCATTCTTGTGCTGTACTTTGCCATCGAGAACTTTGTGATTCAGAAGAAGCAGTGGCTACCCGAATGCACTCCAGTCTACATTCAGTATTTTGTGAAGTTCTTCATCATCGGTGTCACCGTCCTGGTAGTCGCCGTTCCTGAGGGTCTCCCTTTAGCTGTCACTATCTCACTGGCCTACTCTGTAAAGaaaatgatgAAGGATAACAACCTGGTTCGGCATTTGGACGCGTGTGAGACTATGGGCAACGCGACGGCAATCTGCTCTGATAAAACGGGTACACTCACCACTAACAGGATGACCGTTGTCCAGGCATATTTTGGGGACGTCCACTACAAAGAGATCCCAGACCCCAATTCCCTGTCGGCCAAGTCACTAGATATTCTGGTCAATGCCATCTCTATCAACAGTGCATACACCTCGAAGATC

Function

symbol description
atp2b2 Predicted to enable P-type calcium transporter activity and PDZ domain binding activity. Predicted to be involved in regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within neuron differentiation. Predicted to be located in cytoplasm. Predicted to be active in intracellular membrane-bounded organelle and postsynaptic density membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 12. Orthologous to human ATP2B2 (ATPase plasma membrane Ca2+ transporting 2).

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 2 isoform X5

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017194 True 1326 mRNA 0.47 7 50011932 50031382

Neighbor

gene id symbol gene type direction distance location
AMCG00017195 LOC107697566 coding upstream 14481 49993362 ~ 49997451 (+)
AMCG00017192 iars coding upstream 106351 49851298 ~ 49905581 (+)
AMCG00017190 NA coding upstream 180853 49821733 ~ 49831079 (+)
AMCG00017189 NA coding upstream 199965 49805827 ~ 49811967 (+)
AMCG00017188 NA coding upstream 215777 49790879 ~ 49796155 (+)
AMCG00017193 atp2b2 coding downstream 13836 50045218 ~ 50061365 (+)
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding downstream 147073 50178455 ~ 50190780 (+)
AMCG00017197 NA coding downstream 234277 50265659 ~ 50267149 (+)
AMCG00017198 atg7,LOC107697561,LOC106907352,LOC106911936 coding downstream 239849 50271231 ~ 50303625 (+)
AMCG00017204 NA coding downstream 371937 50403319 ~ 50403624 (+)
G18909 NA non-coding upstream 338006 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 341643 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 518583 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 800676 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1685127 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 122976 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 124071 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 301084 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 302378 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 310035 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 284365 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 608087 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 629714 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5050331 44949034 ~ 44961601 (+)
G18192 NA other upstream 5355834 44654652 ~ 44656098 (+)
G19113 NA other downstream 520498 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 528068 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2782871 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2789679 52821061 ~ 52834042 (+)
G19683 NA other downstream 3304527 53335909 ~ 53339655 (+)

Expression


Co-expression Network