AMCG00017195 (LOC107697566)


Basic Information

Item Value
gene id AMCG00017195
gene name LOC107697566
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 49993362 ~ 49997451 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017195
ATGGGGGACCTGACAAACAGCGATTTTTACGCAAAGAACCAAAGAAATGAGGCCAACCATGCGGGAGAGTTTGGCTGCACACTGGAGGAGTTGCGCTCCCTCATGGAGCTGCGGAGCACGGAGGCTGTGGTCAAAATCCAGGAGGACTATGGGGACACCGAGGGACTCTGCAGGCGCTTGAAAACATCGCCAACAGAAGCCTTAGACTCCTGCCCATGCACCCCTGGAGTGTGCAGCCACCCAAACAGGACTGGCCAGAAGAGCAGACACTTCATCGTCTCCACCACCCATGGGGCCAAGACCTTCCTACCATTCCTGGACTTTCCCAAAGAGAGCTACAACAGCCCCCCAGATGGGTGGCAGCTTCTGATCTCTGCATTCCCGAGTTATTCCTTGGCACTGGTCCCCTTGCCCCAGAAGAATCGATCCACTGTCCTCTGCATTTCCCCTGCCATGACCATGCAGTACTCAGTGTTGATCTGGTTTGCATTGCTGCTACAGCTCCAGCACAGCCATCTGTGGCCCATCCTCAGGGATCTCATGATGCCAGCACAGGATGCTCTTCAGCACTTTAACCCTGAACAGGGTCAGGTCCAGCCCCTGAAGGGGAGCAATTGTTGA

Function

NR:

description
PREDICTED: plasma membrane calcium-transporting ATPase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017195 True 621 mRNA 0.55 3 49993362 49997451

Neighbor

gene id symbol gene type direction distance location
AMCG00017192 iars coding upstream 87781 49851298 ~ 49905581 (+)
AMCG00017190 NA coding upstream 162283 49821733 ~ 49831079 (+)
AMCG00017189 NA coding upstream 181395 49805827 ~ 49811967 (+)
AMCG00017188 NA coding upstream 197207 49790879 ~ 49796155 (+)
AMCG00017185 NA coding upstream 212464 49768960 ~ 49780898 (+)
AMCG00017194 atp2b2,LOC107561799 coding downstream 14481 50011932 ~ 50031382 (+)
AMCG00017193 atp2b2 coding downstream 47767 50045218 ~ 50061365 (+)
AMCG00017196 slc6a1,slc6a1b,LOC107746710,LOC107670967 coding downstream 181004 50178455 ~ 50190780 (+)
AMCG00017197 NA coding downstream 268208 50265659 ~ 50267149 (+)
AMCG00017198 atg7,LOC107697561,LOC106907352,LOC106911936 coding downstream 273780 50271231 ~ 50303625 (+)
G18909 NA non-coding upstream 319436 49673085 ~ 49673926 (+)
G18908 alas1,LOC106566237,LOC103399559 non-coding upstream 323073 49582264 ~ 49670289 (+)
G18865 NA non-coding upstream 500013 49436264 ~ 49493349 (+)
G18791 NA non-coding upstream 782106 49206808 ~ 49211256 (+)
G18722 NA non-coding upstream 1666557 48322263 ~ 48326805 (+)
G19040 NA non-coding downstream 156907 50154358 ~ 50154694 (+)
G19042 LOC103376870 non-coding downstream 158002 50155453 ~ 50155825 (+)
G19058 NA non-coding downstream 335015 50332466 ~ 50333366 (+)
G19059 NA non-coding downstream 336309 50333760 ~ 50334506 (+)
G19061 NA non-coding downstream 343966 50341417 ~ 50342150 (+)
AMCG00017183 NA other upstream 265795 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 589517 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 611144 49372022 ~ 49382218 (+)
AMCG00017099 cav3,LOC107673475,LOC107749619,LOC107584510,LOC107577493 other upstream 5031761 44949034 ~ 44961601 (+)
G18192 NA other upstream 5337264 44654652 ~ 44656098 (+)
G19113 NA other downstream 554429 50551880 ~ 50552985 (+)
G19114 raf1,LOC108276324 other downstream 561999 50559450 ~ 50563278 (+)
AMCG00017280 NA other downstream 2816802 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2823610 52821061 ~ 52834042 (+)
G19683 NA other downstream 3338458 53335909 ~ 53339655 (+)

Expression


Co-expression Network