AMCG00017210 (isy1,LOC108431508,LOC107700632,LOC108254962)


Basic Information

Item Value
gene id AMCG00017210
gene name isy1,LOC108431508,LOC107700632,LOC108254962
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50632108 ~ 50638968 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017210
cGGCGTGCGATAGTGGGGGGAAACGCTGCAGTGTTGACAGCAGTCGAACCTGAACAACAAATATGGCTCGAAACGCTGAGAAAGCAATGACGGCCCTGGCCCGGTTTCGCCAGGCCCAGCTAGAAGAAGGAAAAGTTAAGGAAAGGAGACCGTTTCTTGCATCTGAGTGTAATGAATTGCCAAAAGCAGAAAAGTGGAGGCGACAGatcATCAGTGAAATATCTAAGAAGGTGGCTCAGATTCAAAATGCTGGTTTGGGAGAATTTAAGATCCGCGACCTTAATGATGAAATCAACAAGCTTCTTCGGGAGAAAGGACATTGGGAGGTTCGGATTAAGGAACTGGGAGGTCCTGATTATGGCAGAGTTGGACCTAAGATGCTGGACCACGAAGGCAAGGAAGTGCCTGGAAACCGAGGATATAAGTATTTTGGTGCTGCCAAAGACCTTCCTGGAGTCAGGGAGCTATTCGAGAGAGAGCCAATCCCTCCTCCCAGAAAGACTCGGGCTGAGCTGATGAAGGATATCGATGCAGAGTACTACGGCTACCGAGACGAAGATGACGGGGTTTTGGTGCCTTTGGAGCAGGAATATGAGAAACAAGTCATCGCAGAGGCGGTGGAGAAATGGAAGGCAGAAAGGGAGGCTCGGCTGGCTGGAGGAGGACTGGGAGacaaggaagaggaggaggaggaatatATTTACGCAGTGCACGATGATGAGCACTCTGATGAAGACATGGGAGAATTAATGGAAGGAGAGGAAGGATCACAGTCCTTTATAGCCCATGTCCCTGTACCCTCACAGAAAGAGATTGAGGAAGCCTTGGTCAGAAGGAAGAAGATGGAGCTCTTGCAGAAGTACGCCAGTGAGACGCTGATGGCACAAAGCGAAGAAGCTAAAACACTCCTGGGATTATAGCAGGAATGACGGACTAGGATGGGTCTCAAGTCTTGATCTCTGCAATGTGCCGCACATCTGCAATTCAGATGTAAAGTAGGCGTTTAAGTAGCTACATCACAGACCGTTTGCAAGATAACATATTTACTACGaggatattttcttttcagactCACAGCAGTGTTAAAGGTCATGTGCAGTGAGTTACACTTACATACATGTCAGTAAAAGTGTTCCAATGCATAAGATACATGTATCCTGCTATATTGTGTAGGTCTCAAACGTTGAACaagaaatactgtaaataacttttttattaatctgtacTACCGTACTGCATACTgcattgtctttaaaatgtattttctaaaaatgaattgagtgtattttaataaaatgttgtattgacTTGTGTATTATGCTGTTTCATACATGTCATTATTTGTGCTGTTTTCTCTTATCAGTATGGCTATTGAAAAGTGGATAGCAAACATCAAGTATTAAATCTGCTGCTTACACAATTGAACATCCACATGCTGTGATTGTTACGTCTGATAAGCCAGTGGATGAAATAATGGTTAGATATTTCAGGTGAGACAGGAAAG

Function

symbol description
isy1 Predicted to be involved in generation of catalytic spliceosome for second transesterification step and mRNA 3'-splice site recognition. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and spliceosomal complex. Orthologous to several human genes including ISY1-RAB43 (ISY1-RAB43 readthrough).

NR:

description
PREDICTED: pre-mRNA-splicing factor ISY1 homolog

GO: NA

KEGG:

id description
K12870 ISY1; pre-mRNA-splicing factor ISY1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017210 True 1504 mRNA 0.44 11 50632108 50638968

Neighbor

gene id symbol gene type direction distance location
AMCG00017212 LOC106583855,LOC107742030 coding upstream 10161 50615239 ~ 50621947 (+)
AMCG00017207 NA coding upstream 94438 50526813 ~ 50537670 (+)
AMCG00017206 NA coding upstream 109566 50517042 ~ 50522542 (+)
AMCG00017205 NA coding upstream 118753 50501043 ~ 50513355 (+)
AMCG00017202 syn2,LOC107742035,LOC107571222,LOC107667867 coding upstream 155353 50458963 ~ 50476755 (+)
AMCG00017211 NA coding downstream 6144 50645112 ~ 50652585 (+)
AMCG00017209 NA coding downstream 25358 50664326 ~ 50672185 (+)
AMCG00017217 NA coding downstream 57878 50696846 ~ 50711492 (+)
AMCG00017225 hdac11 coding downstream 321865 50960833 ~ 50972601 (+)
AMCG00017224 LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433 coding downstream 346291 50985259 ~ 50989853 (+)
G19146 NA non-coding upstream 474 50631378 ~ 50631634 (+)
G19062 NA non-coding upstream 280161 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 289958 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 297602 50333760 ~ 50334506 (+)
G19058 NA non-coding upstream 298742 50332466 ~ 50333366 (+)
G19152 NA non-coding downstream 1619 50640587 ~ 50640802 (+)
G19195 NA non-coding downstream 88772 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 498325 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 656864 51295832 ~ 51296718 (+)
G19292 NA non-coding downstream 700945 51339913 ~ 51340117 (+)
G19114 raf1,LOC108276324 other upstream 68830 50559450 ~ 50563278 (+)
G19113 NA other upstream 79123 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 904541 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1228263 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1249890 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 2175285 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2182093 52821061 ~ 52834042 (+)
G19683 NA other downstream 2696941 53335909 ~ 53339655 (+)
G19754 NA other downstream 2864464 53503432 ~ 53536464 (+)
G19829 NA other downstream 3151579 53790547 ~ 53792694 (+)

Expression


Co-expression Network