AMCG00017217


Basic Information

Item Value
gene id AMCG00017217
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50696846 ~ 50711492 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017217
ATGGAAATCGGTGATTCGGAGATCCCTTTGGAGGCCGAAAGAAGCAACACCAGTTGTTCTTTGAAACGCCAGTTTCCAGTGGGGTATGATAGTGGGATGGCTACAGATGAGGGTGGCAGAGAAACTGACCAGGAAAGACTGTCTCCACGCAGCCATAGAGAAGACAGGAGCCTCGAAACTCCCAAATCAGCTTCCAGTTCAACGTCTCGCACATCATCTCTTTCTGGGAACTCAATTCAGAGGGAAACTGAATCCTCCAGCACTCACACTGTAACCTGTACCATCAGCATCACGCTAGCTATCCCTAGAGGcgaagaagaggagaaaaatgCTGTTGCGGAGAAGGCGAAGAAAAGGCCAAAGAATTCCAGTGGAATAGTTGAAGCTCCCAAAGCGCAGAGTTTTTACCACATTGAATATTTCCTGACCCCCGACGATCCAGAGCCCACAAAAATTGATTTGGTGATGTTTGGACCAGCTGCCAAGGTCTACATGGAAAATGAAACTAAGATTTTAAAACCCTGGCAAGACGGAGACCAGACGTGGCTTGGTTGGAGTCAGTCCTTGGAGCTTAAGGTCAACAGGGAACTCTTAATAAAACTGACCTCTCACAAAATCACCTTCAGAGTGTGGGACACAAAGGACCGAGTGTCGGCCAAAGCCAGGTATGACCGACCCAAAGCCTTCAGACTGCCCCAGGGGAGGAGCGGGGAGGACCCAGACAATGCTGgtGGTATCAAAAGTATGGTACAGAAGCAGAGGAAGCTGTTTGAAACAAGGCAGCCAAAGTCCAGTCATACTGGCCGACAGGAGAAGAGCTGCCTTGGAGCCGAGGCTACTAGGGAATCTGTGCTGAACTGTGTGGCGGCAACACACAACGAATTGGCCGCAGCAGAATTGCTGAGGAAGAACGGCGCTGCCACAGCGGAACTGGATCCGGTGCATTTGCTAGCAGGAGACACATTTGTGACTAATTGCTTGATTAGTTCCTCGCCTGGAGTTCGGGAAGGCTTTTGTACTGTCTCTGTAGATAAATCACTAATTCCAGAAGAACTGAAATGGGATCTGAACCCTCTTGTCATCAAGATAGAGTCGGCCACCTGTCTGCCAACGTCCCCTGTTCCTATTCATGAACTTAAGGCAAACTGTGCTCCAGTGTTTTGTTGCTATAAATTCCCCGGTACCAACGGCCACCGCACGAAGGGCCGAGACCACGGCACACACGTGTACTTCAATGACGTCAGTGTCATCCTGACAGGCCTGCTGAGCACCGGGAGTTTTCGAGAGTTTCTCGGTGGATCACCTCTGGAGATAGAGGTCCACGACAGAGACAAAAGGATGGAGAAACCACCCACGAAGCCTGCGTTGTTTGGCACCGAACCCGATGATCAGAAGTTGAGCAACGTGGGTCTGGTGTCCAGCAAACGAACCACCCACAATCCGTTTCAAGACAAGGCCAAATCATTTGATCCGTACGGCATCGCGAAGGTCGACCTCTCCGGTTTGTTACGTGGGGAAAAGAGTGTGAAGGTCAGAGTGCCGATTCATTCCTCACCACCTCCAGACCCAACCGGTCATGAAACCAGTGGATGTGAGGGTAGGATAGTCGGACTTGCAGGGTCCGTAGATGGTCCACAAGACTCGCCTTTTCCCACCGGTCATTACTTGGATTCAAATTCTCTGCTTAAAGTGAGTGTTGAAATCACTTGCCCTCTGTCCCAGGAATCCAGCGCCATCGAAGGACAGATGACGGACTGTCCTTTTGGACGCATCGTTTACATCTGCAGGTCTCAGAATTGCCCCGTGGCGACTCGGCTGAGGTCGGAGATTTATAGGATAAATGCCGGCGCCTTTCGGTTGGAGTCGTATCCAGAGAGATTGATTGAAAACGCTCTGTCCTGTTATAAACTGAAACCgaaggaaagagagagcagagatCTGGACATTGTCACGGGTTTCCATGTGCAGGATGGGAAAATGCACCTCTTTGTACTCGAGGGGCTGAGGAATCAAGCCATCAGAAGACTGTGGGAAAAGATACCAAGAAAGTCTCGCAGTGCTGATGAAGGACATGTGGAAGTGTTTTATAACTCTGAGCTGGGCTTCGAGCGGCGGCTCTATGCTGTCTTAAATATGAACGTCTGTCAAATCCATCTCCACGAACCCCTGGCAGATATAATGAGGCAGCCCTTGCTTTATGTAAGGGATATGGTTCCTCTGGCCTGCTTCCAAGCCTTGTCAcgACTAGACCTCATCTGCCAAGCGAAGAAGCTCAAAGATGTGACGCACAGCAACCTGTTCCCCTCCGCGGAGATGATTCTCAGTCTGAGCAAAGAGTTTGGGGTTATTCTACAGAGAGAGGAGACCTTAAAGGGTTTCAAGAGAAGTCTGACATGGGACAGTACAGAATTCCCGCCTGCGAACGCTGAAGCCCAGACCCTGCACAGCCCACTGTCCACACACAGTGCAGACTATATGGAGTGGACATCACAAATGTTCACCCAGGATCGTGAAGGGACACAAAAAGACTTCATCAGGGATAATATTGAAGAAGTGCGTCAAGCGAGTAGAAAACTACGAAGACCAAAACCGGATACGATAGTAGCTCTTCCTCCTCCGGGCAAGGAGGCTCATAACTACAGTACCCAAGCGTGGAACTCCAGCCAGCAGGCCAGGGAGCTGCTACGCCGAGAGATGGCGAAGGAGCCATCCCGGAGGTTCACATACAGCCAGCAATACCAGTCGGCTACAGTAGAGCCGGTGGACGTTGAGAGTGAAGTTAAGGCCGCCGAAGCCCGATCAAAGGCAGCCTGGCGTACCTGCGACGGCTTCACGTATCCGGGCATCAGGAGCAGCATAGAGTCAAACGAACATCACAGGAGACCCGACGACGCCCGCACCGAGGAGCTGAGAAAGCCTTGGAGAGAGAATATTCTCCATGCCAAGACGCTGCAGCCGCCCCTGTCTCGTGAGCGATGGAGCTGGAACAAACGACATGCGGATTTCGAGCTGTACAAGCGCCCCCCCCGCTTCTCCAGTCCCGAGCCCCCAGTTACAATATACCTGGCAGgAGACCGGCTGCATGAGGAGCAGCTTCAAGCCGCCCGGGCACAGTACCTGAGGTGGCTGAACAAAGTGCTGGCGACCGACGACCAGAAACTTAGTCGGCGCTCTTTGGAGTTCAAGTGTCACACAGGTGGAGGCAAAGAGCTACTGAAGGATAAACCCATGAAATACTCTTTAAGGAGGTCAGGAATGATCCTTAAACCCATCCCGGCACTGTCCGTACTCCAGCACGTGGATTCGAGTGGCCCAGAGGAGGCGGGTCGGGACGTCTCTGCCGGGTTTGCACCAGGCTTACTGGAGAACCACAGCCTGTGCTGGGATGGCAATATCATACCTCGGCACAACTTTGAGCACAAGAAATTCCAACAGCTCAAAGGACAGCCATTTGTGggagtctggagagagagactgtttcAGTGCAAGCGTGTGTCCAGGCCGCTGacggaggaagagagaggggtgtACCTGTTCCAGCGGCCTGGCCCGGTCACTGAGGACAGAGCCGTGGCAGTCAGGGCCCGGCCGGGGAGAAACATTGTGGAGACCAAGACCTGCCACgatgtcttcacacacatcGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017217 True 3648 mRNA 0.52 15 50696846 50711492

Neighbor

gene id symbol gene type direction distance location
AMCG00017209 NA coding upstream 24661 50664326 ~ 50672185 (+)
AMCG00017211 NA coding upstream 44261 50645112 ~ 50652585 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding upstream 57878 50632108 ~ 50638968 (+)
AMCG00017212 LOC106583855,LOC107742030 coding upstream 74899 50615239 ~ 50621947 (+)
AMCG00017207 NA coding upstream 159176 50526813 ~ 50537670 (+)
AMCG00017225 hdac11 coding downstream 249341 50960833 ~ 50972601 (+)
AMCG00017224 LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433 coding downstream 273767 50985259 ~ 50989853 (+)
AMCG00017227 NA coding downstream 337129 51048621 ~ 51068325 (+)
AMCG00017226 NA coding downstream 448427 51159919 ~ 51165248 (+)
AMCG00017229 NA coding downstream 458121 51169613 ~ 51176459 (+)
G19152 NA non-coding upstream 56044 50640587 ~ 50640802 (+)
G19146 NA non-coding upstream 65212 50631378 ~ 50631634 (+)
G19062 NA non-coding upstream 344899 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 354696 50341417 ~ 50342150 (+)
G19059 NA non-coding upstream 362340 50333760 ~ 50334506 (+)
G19195 NA non-coding downstream 16248 50727740 ~ 50728151 (+)
G19245 NA non-coding downstream 425801 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 584340 51295832 ~ 51296718 (+)
G19292 NA non-coding downstream 628421 51339913 ~ 51340117 (+)
G19366 NA non-coding downstream 853797 51565289 ~ 51571994 (+)
G19114 raf1,LOC108276324 other upstream 133568 50559450 ~ 50563278 (+)
G19113 NA other upstream 143861 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 969279 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1293001 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1314628 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 2102761 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 2109569 52821061 ~ 52834042 (+)
G19683 NA other downstream 2624417 53335909 ~ 53339655 (+)
G19754 NA other downstream 2791940 53503432 ~ 53536464 (+)
G19829 NA other downstream 3079055 53790547 ~ 53792694 (+)

Expression


Co-expression Network