AMCG00017224 (LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433)


Basic Information

Item Value
gene id AMCG00017224
gene name LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 50985259 ~ 50989853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017224
GGGGCGATTAAGAGGAAGGTGGAACTGGACTGGGGCACCGAGGATCAGGAATATCTCCAGAAGGTGGAGCTCCACACCGAGGGAGCGCTGAACGAAATGAGACCCGACATCATCGTGTACAACGCCGGCACCGACATCCTGGACGGAGACCCGCTGGGAGGCCTGGCGATCTCGCCTCAGGGCATTATTAAAAGGGATGAGATCATCTTCAGAGCTGCCCGTGGGAGGAAGATACCGATCCTCATGGTGACGTCGGGGGGATATCAGAAGAGGACGGCGCGGATAATAGCCGACTCTATCATTAACTTGCACAATCAGGGGCTGGTGGACTGTGACTCGGCTGCGGGCGCTGTGGGGCCCTCGCACGTGCCTCTGATGATGAGCAAGTCTGTGTCTGCCGCCGCGGCACTCTCTACACACTGATCCTGGTTTTCTATTCTCTCGTCCCGTTTCGGTTTCTTCCTGCCAAGCAAAGCTGGTAACTCTTTGGTTGTTAATGTCTGATCCCCTTTCTCTTTGCCTCGGTGAGGATGTTGAGGTTTAATTTGGTTTTAGTGGTCAACGTATTCCTTTATATTTGAGGAGTGTGTTTTCTCATTGATAGCTGCTGTCATTTACGGTGAAGCGTTGTACATAATATTTAGGAAGAGCTTCCAGGCTAACTTCACAATATTGCTATATCACCTAAGCAATAATCGTAGATTGATTTGAGTTTTGTTATTCCAAAAGGAGATTTCAGGTCACATTTACAGTATACATCTTTAACTTCATCAAAGAATacctgttttatttcttcttgaGTTGGAATGAACTTCGGaaagattattatttagtttcaaGCCAGACAGGGTGGCAGCTGCATATATGGATGGTTTCCtttgaaatgtgtacattttcaaatatataaataattaacataataattaaactatCAGGTTAACAGTAACAGTttgaaaatgatcaaaacaaaCGGTCAAAACAAAGCATGAAAAGCTGCCATTTTGTTATGTTCTCGTAAATTGTGTTTGACATCATGTGACAAATTATTTGAGGACCAAAAATccaattatgaataaataaagaaaatgaaacggAGTTATCTTAAATGCTTTCACTGACAGAAAAACTCTTCAGCTCGTTAAGAGGTTTTAGTTAGCCGTGTTTCTTAACACACATTTAAGGGGAAAATAGCAATGTATGCATCATTTAACCCAAAAGATTTGTTGCAAACTTGTGAGATAACTAATTAATTTGATCATGTGACCTTTGGATGGTACTAAAAAGCAGTTCAGAATGGGATGAACTAATAATGTTTTCAGAAGAGACACAAGTAAAGTGATGTATCCTCTGTTTACATAATATTTAagacagttgttttatttttctaagataaGGAATGACATCTTGCGTTCTAAATTCTGTTAGAAAAGATAAGATTGTTAAGTCCTGTAACTGATGGGTTTATTCAGTAcgttatttttgtataaaatgtggttttaatGGTTATACGTTGAGTTTGAATTCACTGCAGTCCTTGAATGATGAAACGCTGCCTTAAGATGAGTGGTTACAAGAAACGAATGTGAAAATAACTACATTGAGCAAAGTCTGGTTATTAATGCTTATTTATCAGTGCTGGGGTTTGTGAGATTTGTAAACATGTGCAGTGTGTTGAAACACTAAACTGAAATGCACTTGCCAGGAGTAAGTCCTTTTTTAGATTTACACTGAATTGTATTCTAGATTGCTTATTCATGCAACCTTTTTCATTTAGTATCACATACTGATCAGTGCTTTATTGCCTTCACCAACAGCCAATTTGGGGGAACTTCAGGGATACAACATAACTTTCAAGCATTTGATGAAATATGGAAGAGAATATATATAGGCttttaataatgtttgaaattgttttaGAGAATATAGGAATATCACAACAGTAAATACAGCTTTACAAATACTGCACCTCATAGAAACCAACTTAGCCCCTCAGGGctacacaattatttattagtGTTCTGTAAGTtgctaaacacattttttccctAATTTGGGCCAGTGTGACGTTTATATTTACTGTCCCAGAAGCAGAGCATGCCCATCTGACCTGTCTTCAGTCTGACCTCCAGTTCATGAGGGGGTGGGTTTGCTTTTCTCTGATGGAAAGAAAGCCTGATCTCCAGTAAACCCAACTTCCTTTCAATGGGATTTTAGGGCATAGGGGCATATTTTTAAGGATGTAGGGTCTTTCCTggtagaaataaatacaacccCTGTCTAGTTGCACATTTAATGTCTCAGTATTAAGTAAGCCACGCATTTGCTCTTATCTGTCACTTAAATTATcgttaatttgaaaacattaaatggaTTCTCATGACATTCATGTTTTACAAAGGCACGATGCTTCTCaaccaaattatttatttcacctcgTGACACAGTTCGGCTTCAGTCTGTGGGACACTTGCTATATAAAGTAAAGTCTGGTTACGCTTTTATCTTTTGTGGGTTTTCCTTTTTCACCTTTTCTCCTTGAAATATATACGTTTACTTTCCTCAATAAAGGTAACCGCTTTCGAATAAAAGACTTGCACCTGCCGGACAACTGAGGCAGATTTTAAAGTGATGGTTGTACCTGCTGTCCTTAACCATGTAGCTCCTCTCCACTGAAGCAGTCACTTTCAAATATCATTTCAGATAACTAACAGCAGAGGAACTGAGCTGCAGGTGCGCATTCCTTATtggatatgtttttttcttctactttcCTCTTCTAAGCTTTTTGGCATCCTTAGAGGAAGCATCTGCTTTTTGTGGCGAAATGAATGGAGACTTGTCTGTTTCACTTAGCTTGGGAAATAATGATCAATGCAGAGAAAATACGAGTCAAGACTAATATGCCACGAAATCCAATGTTATGAATCTTTAGGTCATATTCGTGATTTATCTAGGAAAGCAGGTCAGATATGCCGCTAAGAAAGATTTTGTTGTGAAAAGatgtctgtgctctgtgtttgtaATGAAATATATTGCCTGTTTGTATTATAGAAATGTAGGTTTTATATTCTCTCATTTATCTCCATCCCAGATATTTCCCACACAGTACACTACAATATGAGCATAGTATCTCCCAACTGATCCAAAAGTAAAAGGCTTCACCCCAGCCGAACTGGAAAGGTTGCAGAATAAGCGAGTCTAGGTGAGGGAATGGGTAATTGTGTGCTTTTGAGAGTTTGATTTATGACACTTTATATTCAGCGGATAAAGGTTAATGTTTATATTCTGCATATTGATAAAAATATTGTACCCAAGGAAACAAATTGTGCCAAATATAAGTACTTTTGTTAACTATTGTTCCTttcttgtacattttgtgttatttatttttaaccgtGCTCTTAATATATTAAAACCAATGATTTAAACTGATGTGATGAGACGTGTCTTGACTTTTAAGAGAAAGTGTCTCGGAG

Function

NR:

description
PREDICTED: histone deacetylase 11-like isoform X1

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017224 True 3476 mRNA 0.38 2 50985259 50989853

Neighbor

gene id symbol gene type direction distance location
AMCG00017225 hdac11 coding upstream 12658 50960833 ~ 50972601 (+)
AMCG00017217 NA coding upstream 273767 50696846 ~ 50711492 (+)
AMCG00017209 NA coding upstream 313074 50664326 ~ 50672185 (+)
AMCG00017211 NA coding upstream 332674 50645112 ~ 50652585 (+)
AMCG00017210 isy1,LOC108431508,LOC107700632,LOC108254962 coding upstream 346291 50632108 ~ 50638968 (+)
AMCG00017227 NA coding downstream 58768 51048621 ~ 51068325 (+)
AMCG00017226 NA coding downstream 170066 51159919 ~ 51165248 (+)
AMCG00017229 NA coding downstream 179760 51169613 ~ 51176459 (+)
AMCG00017231 NA coding downstream 222326 51212179 ~ 51212391 (+)
AMCG00017230 NA coding downstream 224406 51214259 ~ 51214516 (+)
G19195 NA non-coding upstream 257108 50727740 ~ 50728151 (+)
G19152 NA non-coding upstream 344457 50640587 ~ 50640802 (+)
G19146 NA non-coding upstream 353625 50631378 ~ 50631634 (+)
G19062 NA non-coding upstream 633312 50351252 ~ 50351947 (+)
G19061 NA non-coding upstream 643109 50341417 ~ 50342150 (+)
G19245 NA non-coding downstream 147440 51137293 ~ 51138835 (+)
G19275 NA non-coding downstream 305979 51295832 ~ 51296718 (+)
G19292 NA non-coding downstream 350060 51339913 ~ 51340117 (+)
G19366 NA non-coding downstream 575436 51565289 ~ 51571994 (+)
G19465 NA non-coding downstream 1117095 52106948 ~ 52116341 (+)
G19114 raf1,LOC108276324 other upstream 421981 50559450 ~ 50563278 (+)
G19113 NA other upstream 432274 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 1257692 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1581414 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1603041 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 1824400 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 1831208 52821061 ~ 52834042 (+)
G19683 NA other downstream 2346056 53335909 ~ 53339655 (+)
G19754 NA other downstream 2513579 53503432 ~ 53536464 (+)
G19829 NA other downstream 2800694 53790547 ~ 53792694 (+)

Expression


Co-expression Network