AMCG00017226


Basic Information

Item Value
gene id AMCG00017226
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 51159919 ~ 51165248 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017226
TTTGTCACTTGCCAGCTATAGTCCATTCATGGTGAATTACACAGCATTAGGTATATATTAGGTATATAGGCATATCATTAGGTCAGCaccagtgaaaacaaaagagaaCAGGCAGTCCATAAAGCCACTAAATCACATGCTAGACCCTCCTGGACCACTTCCCACCAGAGCAGCGATGTTCCCGCAGAAGACAATCCACAGGAAACTGTTTGTACAGCTCCGAGCGGTTGTAGGACGAGAGGATGAGATTTGGATACAAGGTAGAGAACGCATTTTCTCATGTGTCCCTCCTGGCGCACTGTAGCAACAGAAAAGTCCAGGAAGTGAGACCCAAACACGGACCGATGGTGGCAGCAGCTGCAGAGCCGCCGTTTGCGTCTCCGTTTTGACACCATGGACTGCGACTCACCTGAGCTGACTCTGGACTCTCTGATCTGCATCTTCTCCTACCTGGGGGAGGAGGACCTGATCAGAGCTGCTCTGGTCAATAAGTTCTGGAATGAAGCTGCGGAGACGGCCTGGCTGTGGCGACAGATGTCTCTTAAGCGCTGGAGTTTCTGCAATCTTTCTCAGCTCCCCGCAGGAATGCAGACATGGAAGAATTATTATCTGCGTCGGTCCAGACTGGAGCGCAACATGCAAACCGGTCGTGCTGCGGCTGACTACACCGCTAAAACCTTGAGAGGTCACACCGgcCGTATTGTCGGTTTGGCGTATGTCTTGGGGAACAGCAGTCTGTCCGATTCGTGGAAGTCCATGTCTGTCGTCTGTAGTGCCTCCACGGACGGCACGATTCGAGCATGGAATGTTCAAGAGGGGGTTCACCTGTGGACGACGTCTGTCCAAGAGCCTCTGGGAATGATTATAGCTGACCAGCAGAAGGGCCTCCTTTTCAGCGCAGACTCCCAGGGAACAATTAAGGCGTGGAAGGGGCTTACTGGAGAGGAGCTAGGATCCTTCCCCACCTCCTCGTCCGCATGTTCACTGCTGTCCCACACTGTGGAGGATCAGTCCTTCCTGATTGTTGGCTCAGCTGGGGGATCTCTGTACACCTTAACAAGTCCTGCCCTGTCGCAGGTATCCAAGGTGGTTGCGTACGACACGTTCAAAATCAACGTGCTGACTGCCTCTCCAGACAAGCAGTGGGTTATCGTTGgaacaaatgaaaactttgatcAGTTTGTCAAGGTCTTCTACGCTGAAAGTCTGACCTGTCCCTGTAAAGACGAGCCTCTTGTTTCTCAGTCATTACCAGTCAATGGATGTTCGTCTGCCTGCTTCTTGCCCTCAGAAGCCGCCAGAGTGCTGATGCTTCACAGCGATGCTCTGTCACACCATAAGAAGATCTCAGTCTTTGACATCAAGTCCAAAAAATCGAAATACAAAGTGGAAATCATAGCTGAACAGGTGGGATCGTTCCAGTTAGAGACTGGTGGCTGGCACCCAGAGACCCTCCTCCGGGGTTGTGGGAGTGGCACGGTGCTGACGGCCTCGGGACACCATCTGAAGGTGTACACCGTCAACGGCACCATGCTCGCATGTTTCAAAGACCACACCGAACCCATCACCGCCATTTGCGCCGATTCGTTCCGTGTCGTGACCGCGTCGCAGGACCTGTCCCTCCGCGTGTTGACCTGGCAGCAGCTGAAAGACAAAGGCCTCTCCCTGGACAGTCGGTACCACCTGCTGGGAGGGTCTCACATGTTTTCCAGGGGATTTACCAATGTGGCCTGCGATTACGCGAGCATCGTAGCGTCTGTCGCAGGCAAAGATGGGAAAGATGTCCTAAAAGCCTACGTTTTCAACACATAAAATCAGCCACGCAGAGCTGCTTGGGGGATGCAGAGTTTACTTTCGATGCTGCACTTTGGAATTTATTTACCatatgcatctctctctgcgtataataaaaaaaactgtcgCCATCCTTTTCTAACGCCTCGGGTGTTTCAGTAAGGCCCACACTGTCTACAAAGCTTTATGTATGTAACCACGCTAACAAATGTCAAGTCTGGTGTATTTCTATGGGGAGAAATGTAACCAAagaatgtttttgttctgtatttaataatacacGCCGATGTT

Function

GO: NA

KEGG:

id description
K10267 FBXW12S; F-box and WD-40 domain protein 12/13/14/15/16/17/19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017226 True 2085 mRNA 0.51 10 51159919 51165248

Neighbor

gene id symbol gene type direction distance location
AMCG00017227 NA coding upstream 91594 51048621 ~ 51068325 (+)
AMCG00017224 LOC107685648,LOC107727860,LOC107691382,LOC107581396,LOC107749433 coding upstream 170066 50985259 ~ 50989853 (+)
AMCG00017225 hdac11 coding upstream 187318 50960833 ~ 50972601 (+)
AMCG00017217 NA coding upstream 448427 50696846 ~ 50711492 (+)
AMCG00017209 NA coding upstream 487734 50664326 ~ 50672185 (+)
AMCG00017229 NA coding downstream 4365 51169613 ~ 51176459 (+)
AMCG00017231 NA coding downstream 46931 51212179 ~ 51212391 (+)
AMCG00017230 NA coding downstream 49011 51214259 ~ 51214516 (+)
AMCG00017243 NA coding downstream 474389 51639637 ~ 51640615 (+)
AMCG00017238 NA coding downstream 482156 51647404 ~ 51649518 (+)
G19245 NA non-coding upstream 21084 51137293 ~ 51138835 (+)
G19195 NA non-coding upstream 431768 50727740 ~ 50728151 (+)
G19152 NA non-coding upstream 519117 50640587 ~ 50640802 (+)
G19146 NA non-coding upstream 528285 50631378 ~ 50631634 (+)
G19062 NA non-coding upstream 807972 50351252 ~ 50351947 (+)
G19275 NA non-coding downstream 130584 51295832 ~ 51296718 (+)
G19292 NA non-coding downstream 174665 51339913 ~ 51340117 (+)
G19366 NA non-coding downstream 400041 51565289 ~ 51571994 (+)
G19465 NA non-coding downstream 941700 52106948 ~ 52116341 (+)
G19515 NA non-coding downstream 1382501 52547749 ~ 52548031 (+)
G19114 raf1,LOC108276324 other upstream 596641 50559450 ~ 50563278 (+)
G19113 NA other upstream 606934 50551880 ~ 50552985 (+)
AMCG00017183 NA other upstream 1432352 49713467 ~ 49727567 (+)
AMCG00017173 NA other upstream 1756074 49402531 ~ 49403845 (+)
AMCG00017167 NA other upstream 1777701 49372022 ~ 49382218 (+)
AMCG00017280 NA other downstream 1649005 52814253 ~ 52817369 (+)
AMCG00017287 NA other downstream 1655813 52821061 ~ 52834042 (+)
G19683 NA other downstream 2170661 53335909 ~ 53339655 (+)
G19754 NA other downstream 2338184 53503432 ~ 53536464 (+)
G19829 NA other downstream 2625299 53790547 ~ 53792694 (+)

Expression


Co-expression Network