AMCG00017276


Basic Information

Item Value
gene id AMCG00017276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 52763111 ~ 52767644 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017276
ATGCACAGGCGGAACGAAGTGTGCGCGTCGCTGTTTCTGTTCATGCGACCGGGAGGGGATCGTGGTGGGACTCTGCCTCCGGCCAGCGTTCACCCGGGGAGCAGGTGCAGCGCCGCTCGCCGGGGTGCCTTCAGTGCGGCCACACGGCCCCCAGGACGGGCTGTGGAAATCAAACCGCAGACGAGTCTGAACAGAGACGGAGGCCCGCAGGGGAGGCTGCGGCCTCGGACTCGCTTAGGCTTTTGTCAGCCCGCCTGCGCTCCTTCTTTGGgaGGTGGAGGGATGAGCCACTCCTCTGTGATTGGCACAGATGTGCGGGAAGCAGCCAACGGGATAGACGCCATGGGGGGCTCCGCTTCCCCCGAGAGCCGCCCGCCCCGCCACCCCAGCGCCGCCGTCCCGCGCCCCCCGCCCTCGAAGCGCCTTGAGGAGGACGGCCGGGCGGCCCCCCACCCGCAGAGCAGGGGGCGGCAGATGGACGCTGGTGGGGGACATATGAACTGCGCCCCCTCGGGACACAGAGCGGGACCCCCCGGGGAAGGCCCCATCCCGGACTCCAGACAGAGGGGCAGCCGGCCGCCCTGGGATGCGGTGGAGCAGGACAGCTCGGGAGAGGATGAGCGCAGCCTGGAGAGGGGCGAGgcggagggagaggaggaggaggaggaagaagaagaagaagaattcgCAGACAGTGAAGACACCACTGAGCTCAGCACCGCCAGCACCCCCACTGAGCAAGAGGCCGAGAAGGGGGGACGCCGGGGCCCCTGTGGCCAGAGCCGGGGGGCCTGCCAGGCTGCCGGGGGCCCCCGAGATGAGGACGAGGGCTCCACCAGCCCCACTCAGAAGAACAGACCGAACCCCTTCAACCACCTGCCCCTCCAGGCCTCCAGCCTGCCCGCCTGCCCCCCCCATGTCATGGCCCAGGTGCACGTGCGCAATGCCCCGGTCGGGGGGGCCGGGCTGCCGCGCCTGCAGGACAGTAAGAGTCTGGACCGCATCAGTCAGGTGTGCGGTGGCCCCCGGGGCCGGGACCGGCAGCCCGAGGGCCGCAGGGCCACCATCTCCAGCGCCCTGGAGCTCGAGGGCACCGTGAGCCACGATGGGGACCTCACGCACTTCGTGGCCAAGGACCTGCAGCAGAAGATCAAGATGAGCTCCTGCCAGAGCCTGGACTCGGACAGCTCAGTGCGGAGCCGGGGGTCCCAGAGGAAGCCGGCCGATATCCCCCCCATCGACCCGGCCGTGCTGCTGGACTTGCAGAAACACACGCAAGACGTGGCGCACAGCGTGGAGCTGATGACCCGCAGTCTGAATGGCACCATCCAGAACATGACGGCGCTCAGTGTCGGCTACATCCAGACCTACAGGGATTCGGTGGACAGCCTCGGGGAGTCCGTAGACATGAGCATAAAGggaatGTACACCCTGATGGCGCGGTGTGAGGAGCTGGATCGCTCCATGCAGCCCATCCACTCGCTGGCCAAGCAGATCCGCGACATCAAGCGCACGCTGGACTCGCTGGAGTCTCTGTGCAAGTAGAGCAGCCGGGGGGGTGCAAGGTGTCTCCCCAGACCCTGACCTCCGACCCCCGACCACACGCATTTCCTGTCCCACGCCTGGTCCTTGCGCCGCCCTCGTCCCGGACACTCCTCCCTGAACCTCAGCCGGTGGCCTCGACTGGGCTCAACGGGGCGCCACGACCCCGCCACCCCCATTGAGGAGACCGGCCACCCGTCCCCTTTGTGTCCGGACAGACGGGTCCGTCGGGTCAGAGGGGCAGGAACACGCAGGCGACGCACAGACTGGGCTTTGGATCGcagtgcatttcttttttttttgtttttgtttcaactagatttccagattaaattattaaacagtGTTGTGTACAGAAGTGTAAGGGCCGCGGCGGTGCGTGGGCCCAGAGTGTGGGCTGGTGTGTGGGCCCGGAACGATGGTCGCCCATCTGTGAAGCCTCATCAGGTACATATCCAGGTTCAGAAGTGCAATAGAAGGACACTGGGGGTCTGCGATGGTGGGAAGGTCCCGGGTCGTGGAGTTGTGTGTCTTGGACCCGGTCCCTGTGAGTAACGCTGCGACACGGAGTATTGGAATCTGAACTGAACCTCCTTCATTTGCGTATTGTGACTGTAGCGCGCAGTGCAGTGCCCCCCGCCCCGCTCTGCTCAGCACGCGACTCTCGCCAGCCACTGGGcttttccctcttttcttttaTTCCGTGCCTGTCTGGGAGCCTCCGTCGTCTGCGGGCCCCTGACTGGAAAGGAGGTGTTGTCTGCAGGCTGGTGTGTCTCCTGTccccccaaacccccccccccgttcCCTCTCCCCTGTGCCGTGTTCTCGCCCCCCCGCCCGCCTGCCAGCCTGCCCTCCACTCCCGCGGATGTGTGCTTTGCTCTAATAACCCCTGCCTGGGTGTCGTGCGTTTGGCTGCTAAATGACTGACTCCAGGGCCCCAGTGGCTGCTGTCctgtgtgcttttgtgtgtgcgtgtggagGGGAGGGCGGCGGGGTTGGCTGCAGACCGTGTGAagactgcccccccccacaccgaGACCGACCCACAGATGGAAGCACGGACTGAATGGGGGGCCCTGTTCTCACGGGGGTGGTGGGACTAACAGCACTTAACCGTTCCTGTGTAATCATGTCCAGCTCTGTAAATAAGTATGATACGATCTTCAGTTCTCCTTGGGTTTTAATTACCGTTCGTcctaattgtatattttaaaatacacaataaatttacaaaaactgaaaagcaaa

Function

GO: NA

KEGG:

id description
K20820 BORCS6; BLOC-1 related complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017276 True 2796 mRNA 0.64 7 52763111 52767644

Neighbor

gene id symbol gene type direction distance location
AMCG00017277 NA coding downstream 11595 52746059 ~ 52751516 (-)
AMCG00017278 NA coding downstream 17322 52745307 ~ 52745789 (-)
AMCG00017274 NA coding downstream 92615 52669357 ~ 52670496 (-)
AMCG00017271 NA coding downstream 125505 52621765 ~ 52637606 (-)
AMCG00017273 NA coding downstream 147053 52609271 ~ 52616058 (-)
AMCG00017284 NA coding upstream 4485 52772129 ~ 52795850 (-)
AMCG00017283 LOC105025252,LOC106572261,LOC106566794,LOC100710477,LOC108425062,LOC101076147,LOC103027457,LOC104949002 coding upstream 36076 52803720 ~ 52806431 (-)
AMCG00017286 NA coding upstream 44203 52811847 ~ 52814845 (-)
AMCG00017282 NA coding upstream 50395 52818039 ~ 52821117 (-)
AMCG00017285 NA coding upstream 70859 52838503 ~ 52840644 (-)
G19551 NA non-coding downstream 71925 52679953 ~ 52691186 (-)
G19548 NA non-coding downstream 97929 52649008 ~ 52665182 (-)
G19516 NA non-coding downstream 215061 52547737 ~ 52548050 (-)
G19330 NA non-coding downstream 1325018 51437880 ~ 51438093 (-)
G19316 NA non-coding downstream 1466368 51295831 ~ 51296743 (-)
G19604 NA non-coding upstream 1258 52768902 ~ 52769415 (-)
G19663 NA non-coding upstream 242234 53009878 ~ 53010218 (-)
G19687 NA non-coding upstream 470562 53238206 ~ 53238409 (-)
G19741 NA non-coding upstream 650541 53418185 ~ 53419077 (-)
G19873 NA non-coding upstream 1086339 53853983 ~ 53854628 (-)
AMCG00017251 actr8 other downstream 902844 51846596 ~ 51860267 (-)
G19335 NA other downstream 1313325 51445587 ~ 51449786 (-)
AMCG00017234 LOC100690894,LOC102799047,LOC102206238 other downstream 1327872 51430687 ~ 51435239 (-)
AMCG00017232 NA other downstream 1550738 51184231 ~ 51212373 (-)
AMCG00017178 NA other downstream 3268967 49487197 ~ 49494144 (-)
AMCG00017292 tusc2,LOC108433681,LOC104930950 other upstream 90696 52858340 ~ 52866435 (-)
AMCG00017299 NA other upstream 427189 53194833 ~ 53215336 (-)
G19730 NA other upstream 615696 53383340 ~ 53387709 (-)
AMCG00017313 NA other upstream 684474 53452118 ~ 53531131 (-)
G19808 NA other upstream 908439 53676083 ~ 53728883 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000052_01302033_01306271 NA coding CI01000052 null 1300601 ~ 1306317 (-)