AMCG00017307


Basic Information

Item Value
gene id AMCG00017307
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53380895 ~ 53387713 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017307
ATGCGGTTCTATCCCATAAACCCAGGAGCGGCGCTGTCCGTGGTGCGGCCGGGGAGCGTCGGCGCGGCGGGCCAGGGAGACATGGGTGATGGGCAGGTGTGGGCGGTGCCCTTACACCGGCGGGCAGACCTGCTGGGCGCCTGCGCCGACCTCATGAACGCAGAGTGGCAGCGCAGTCAAGGGGCCCGGATTCACTCCCTGGAGAAATCCTGCGACGACTTCCCTCTGTGTCTGGTGCTGCTGCGGCGGGGGGCCGGGGGGCAGGGCGAGAAGCTGCTGGGCCACGCCAGGCTGTCCCGAGTGGTGGGGCAGAGGAGCAGTCTGTTCGTCGAGTCGGTGGTGGTGGCACTCGACGAACGGGGCAAGGGCTACGGGCGGCAGCTGATGGAGGAGGCCGAGAGGTACGCCAGGGGCCGGGGCTTCCGCCGGCTCTGCCTGACCACCCACGATAAGCAGCACTTCTACGCCCGCCTGGGCTTCGTCCTCTCGCGGCCCGTGCAGAGCGCCGGGGCCATGACCGCCTTCGTCCCCATGGAGGCACTGCTGAGGTTCTCCCGGCCAGCGGCAGGAGACGAAGACGATGATTGTGACTGGAGGGGTCCGGTCCCCACCCCGCCACCCTCATCCCTGCCGCTGCCTGGGGAGAGGCCTACCCACTCTGTAGCCCCTCACTCCCCTGTAGCTCCTCCCTTAGCCACTCGCCCTGTACCTCCTGCCTCCCCTCAACCAGATGTCTCTGCTGTGAACGTCCCTTCCTTCCTCAGTACCTctgcccctcctcctcctcctcctcctcctcctccccaatccacacctcctcctcctccctctgccCACACCCGGTCCTCAGCCTCCTTGGCCCTTCCCTCCTCTAAGACGTTACTGGAGACGCCCTACAGGGATGCTAAAGGACAGCCGATCTTCTGGATGCAGAAGGACATCTGAGTCTTGGCTGgatgccaccccccccccccactgtagTGCGGGGGAATCGAGGGGGCCTCTACAGGGACTGGGCACCGGAAGACTCTTGGGGTCTCTGGACTCAAGCCAGCGCCTGCCAAACGATTTCCCACACTGCGATTCATAGCATTCATACAAAGGAAAACATGTAATTTCCGATAAAAATGCAACACCAATACCGAATATTTTGATGGATTTTTAAAAACCGGTGTTTGGGAGCCGCTGCAGTAGAACACCCCTGTCATGGTTCCACTTGGCCCAGTAATGCTCTGTTAATCGTTTTTTTAATTCGCCCATTGCAGCAGGCATCCAGGCAGAGAGAAGATCCAGCGAcacgtgtttttattttaattctcacGGTTGTTGCCTGGAGTTGTCTGAAGCGTTGCATTTAGGTTTGTCAAACATCCACTGGAGGGCAAGATGAGCCTGCCCTAAGATTGGCTCTTGCAGTGTATACTGAGCTGAATTTTGTGTTGTGGAGGGAAATGGGCTTCTAAATTCACTTCCGTCCAATCAGGGTCTGCTGCAGGCTGTTCTCTTCATCGGTGTCCCACAACTCGGCAATGAAACGAATCATCCAGTCTTATAATTGTTTGtatctgttttgtgttaaaattagTCACCCTTAATTTGTCCTTGTTGCCTAGGTGCCTTGTTCTTTGGTGACTGCATTATTTCTGGTGTTTTagctttatattaaaacatcttTGAACATCATCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017307 True 1688 mRNA 0.57 2 53380895 53387713

Neighbor

gene id symbol gene type direction distance location
AMCG00017303 NA coding upstream 853 53374884 ~ 53380042 (+)
AMCG00017300 NA coding upstream 17598 53356581 ~ 53363297 (+)
AMCG00017301 NA coding upstream 78806 53286429 ~ 53302089 (+)
AMCG00017297 cacna2d2,LOC107666002,LOC102776731 coding upstream 105878 53254667 ~ 53275017 (+)
AMCG00017289 acy1,LOC105933287 coding upstream 428940 52936900 ~ 52951955 (+)
AMCG00017308 NA coding downstream 671 53388384 ~ 53392592 (+)
AMCG00017304 NA coding downstream 11142 53398855 ~ 53408838 (+)
AMCG00017306 NA coding downstream 21667 53409380 ~ 53419134 (+)
AMCG00017305 NA coding downstream 31827 53419540 ~ 53429061 (+)
AMCG00017311 NA coding downstream 93125 53480838 ~ 53507197 (+)
G19679 NA non-coding upstream 45511 53306095 ~ 53335384 (+)
G19674 NA non-coding upstream 59957 53276881 ~ 53320938 (+)
G19675 NA non-coding upstream 97689 53239106 ~ 53283206 (+)
G19664 NA non-coding upstream 355961 53024625 ~ 53024934 (+)
G19660 NA non-coding upstream 373364 53007160 ~ 53007531 (+)
G19729 NA non-coding downstream 21252 53408965 ~ 53409300 (+)
G19751 NA non-coding downstream 64417 53452130 ~ 53533874 (+)
G19789 NA non-coding downstream 284271 53671984 ~ 53673814 (+)
G19836 NA non-coding downstream 426072 53813785 ~ 53813987 (+)
G19838 NA non-coding downstream 428132 53815845 ~ 53816076 (+)
G19683 NA other upstream 41240 53335909 ~ 53339655 (+)
AMCG00017287 NA other upstream 546853 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 563526 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 2817617 50559450 ~ 50563278 (+)
G19113 NA other upstream 2827910 50551880 ~ 50552985 (+)
G19754 NA other downstream 115719 53503432 ~ 53536464 (+)
G19829 NA other downstream 402834 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 406913 53794626 ~ 53805796 (+)
G19854 NA other downstream 466194 53853907 ~ 53855839 (+)
G19860 NA other downstream 476395 53864108 ~ 53864718 (+)

Expression


Co-expression Network