AMCG00017319 (LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863)


Basic Information

Item Value
gene id AMCG00017319
gene name LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53674878 ~ 53689906 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017319
CGCTGAGCCAATCGGAGGCGCAGGGGCGGTTCGGGGGGATGTTGCGGGGGGAGAGCAGCGACTGGCGCTGACTGGATCTGCGGCGCTGCGGCGACTCGTCCCCGGCAGGCGCTGCACGGGGCGGTGCGGAGCGGCGGGGGGAGGAGGCCGGCGGCGAGGACAGGGCGctcCTTCCCTCaatctctcgctctccctctcctccactccctcactctctctgctTAACCTGTCCTGCGAGGAGGCGGAGGGCCAGCGCTCCCCCATCATCGAGTTCTGggaTTCGTAGGGGTGGAGGGCTTCATCACTGGGGTCATGGACATGCTGCCCGATTCGCTGGCGGGGTCTGTCCGTCGCGAGGTCGTCGTGGCGATCTgctgcctcacctgtttcatcATCGACCTCTCCATGGTAACTGAGggaGGGATGTATGTGTTTCAGCTGTTTGATTATTACTCGGCCAGCGGGATCACTCTGCTCTGGCAGGCCTTCTGGGAGTGTGTGGTGGTGGCCTGGGTCTATGGGGCAGACCGGTTCATGGATGATATTGCCCGTATGATCGGGTATCGGCCCCTGCCCTTCATGAAGTGGTGCTGGGCGTACATCACCCCCTGCCTGTGTGTGGGTATCTTCCTGTTCCATGTGGTGAACTACCAGCCCCTGTCCTTCGGCACGGCCTACGTGTACCCGCGCTGGGGCGAGGCGCTGGGCTGGGCGCTGGCGCTGGCGTCCATGCTGTGCATCCCGGTCAGCGTCGCATACAAACTGCTGCGCTGCAAGGGCTCCTTCACCGAGCGCTGGCAGCACCTCACAGCCCCAGTGTGGGGACGGCACCATGTGGAGTACCTGGCGTCGGAGTCCGAGGCCAAACTGCTGCCCCCCCAAGGCCAGGACAAGACCACCCTGCTCTTCGAGAGCGTCATCTAGCGTCATCACCGGGGCAGCACCCCCGACCCATCGCTCTGTCTCTACTTTACTCTCTGTCACTGTCAGTCTCTCCATCCAtctctccatccatccatccctctctctctctctctctctctctctctctctctctgtctgtccatcccccgtgtctctccctctctgtctgtggtGTCTGTGCAGTGCCGGTGCGTCCCGTGTTGCAGTGTGGTGAACAAGCTGTGctagtgtgtgctgtgctgtaggcGTGTTGTCAtgctgtgtgcgtctctctgtgccaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccctttctccatctctctctcagcagggaAACACAAGCACAGTACTAAGAGAGAATCAAGTCTGGTTTTTAACTGGTAGAgtattgacattttaaagggATTTAGAgggattttaataaatacattcaaaattaataataatcataattagaGACACAAGTAGACAATGCTGTGTGATTCTGATTTTGTTGCTCACTGGCAAATGATCTTACTCTAATTGCActgattgattattttttctaattcaATTTATCTAAAGAATTATAAtacttttgtagtttttaaatcACGCGACCAGACCGTGTTGTCTGTTAGTATTCTCTGGATTCTGCTGCTTTGCTGTTTTGTAAATTCTCAGCCAGGTTTAAGGTGGTCTGAGCACAGGCATACTGGGGTACCTGTCtgtatctgtgagtgtgtgtgtctgtaagtctgtgtgtttgtgtttgtgtttgtgtgagtatgtgtgtatgtgtgtctgtgtgtgtttgccctGTGCAGCACGGTGCTCTGTCCGCACTCCTGTATCTCAGTCTCAGTTCAAACCCGGCTGGATCGTGTCTTTAAATGCCCCGTGTGCCAGGACCCCCACTCCCCTGCGTATGGCCGCACGGTCCATCTGTATTTACAACCCTCCGCTGGCCGGAGTCCAGGGCGTCAGGGCGTCTTCCAGGTCCCGTACTCCgcccctgccccctgcccctcacacactgcagatcgcctatcaatcaatcaatcaatcaatcaaatcatgTATTTAAGAGCCAGACACTCTGAGATAGGACAGAACCTTGAACGTCTTACCAAAGGCGctacataaacaaaattaactatttgtattattaataatattattattagaccaTAATAACTGTATATGTCTAAACTTAGCGCAGACTATTTGACAATCTGAGGTTTCCCTCATTATTCCTCCGACCAATGTGACTGAGATCAACCAACCAGCTGTCTGTCAGAGAGCTGGGAGCCAATCAGGACACAGGGCCTTAAACAGCACAAGACGGTCCAAAGCACTTCGAAGTACAACCAGACgcctaaattaataaataaagaaataattaaaaatcctGAAATCCACACAGAGATTCAGGGAAAGCTTTGTTTTCATAactctctcagacacacagtCAGCATTTAACAGCTGCCAACTTCTTTCTTCCGTCCCTTCTTGGCCTCAAGGGAATTAGCTCCTTTAGCCCCTGAGAGGCCAGGCAGACCTGAGGGCCCTGTGCTCACATCCTAATCCCAAATTAATTTGGTAAAGCCACCTCGAGCTATTTCTCCTCAATGCCAAATccttagagagagagatgggggttTATTCTAAACCCTCCCCCAGTCCCTTTGTATATCACCAGTGCCTCTCTTAATTGGTATTGTTGTcccctgtatatatattgccCGTATGATTGGCCTGTCAaactgccccccctcccctcaaTTCAAATTAGCTTGATTGGCCGGACTAATTGAgctcagtgttgccaaagcattgacaCCTGTGTCTAGAGCTcaagaacaataaatacagggATTATACACAGTCACACGCTGCAAGGAGACCCCACCCTACAAGACCACCCCGTGCAGGGTGTGTGTTACCTGGGGGGCTGAGGGGAGGGAAGGGAGTTGAAGGACAGGgatgcctctctgtgttgtAAATACAGTTCAGACCTCTTGGGGGGGCGCCATCATGGATTGTGTGAGAAAATgtctattgtttgttttctttataccAAAAACAAGAACTGCAGTTGTGAAGGTGTTGAGTCTGCGCTGGAGTTCGGTGGGTCAGTGATCTGGGAGCAACAGGGACGGGACAATGTGGTCTGATATTTAAAGTAGAGT

Function

NR:

description
PREDICTED: sodium- and chloride-dependent creatine transporter 1-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017319 True 3117 mRNA 0.52 8 53674878 53689906

Neighbor

gene id symbol gene type direction distance location
AMCG00017314 NA coding upstream 5106 53659498 ~ 53669772 (+)
AMCG00017311 NA coding upstream 167681 53480838 ~ 53507197 (+)
AMCG00017305 NA coding upstream 245817 53419540 ~ 53429061 (+)
AMCG00017306 NA coding upstream 255744 53409380 ~ 53419134 (+)
AMCG00017304 NA coding upstream 266040 53398855 ~ 53408838 (+)
AMCG00017323 NA coding downstream 32628 53722534 ~ 53734975 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding downstream 127366 53817272 ~ 53821473 (+)
AMCG00017326 celsr3,LOC106566780 coding downstream 140965 53830871 ~ 53834907 (+)
AMCG00017324 NA coding downstream 186680 53876586 ~ 53883504 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding downstream 323655 54013561 ~ 54033037 (+)
G19789 NA non-coding upstream 1064 53671984 ~ 53673814 (+)
G19751 NA non-coding upstream 141004 53452130 ~ 53533874 (+)
G19729 NA non-coding upstream 265578 53408965 ~ 53409300 (+)
G19679 NA non-coding upstream 339494 53306095 ~ 53335384 (+)
G19674 NA non-coding upstream 353940 53276881 ~ 53320938 (+)
G19836 NA non-coding downstream 123879 53813785 ~ 53813987 (+)
G19838 NA non-coding downstream 125939 53815845 ~ 53816076 (+)
G19889 NA non-coding downstream 222912 53912818 ~ 53914877 (+)
G19899 NA non-coding downstream 258852 53948758 ~ 54041033 (+)
G19887 NA non-coding downstream 269557 53959463 ~ 53961838 (+)
G19754 NA other upstream 138414 53503432 ~ 53536464 (+)
G19683 NA other upstream 335223 53335909 ~ 53339655 (+)
AMCG00017287 NA other upstream 840836 52821061 ~ 52834042 (+)
AMCG00017280 NA other upstream 857509 52814253 ~ 52817369 (+)
G19114 raf1,LOC108276324 other upstream 3111600 50559450 ~ 50563278 (+)
G19829 NA other downstream 100641 53790547 ~ 53792694 (+)
AMCG00017325 nckipsd other downstream 104720 53794626 ~ 53805796 (+)
G19854 NA other downstream 164001 53853907 ~ 53855839 (+)
G19860 NA other downstream 174202 53864108 ~ 53864718 (+)
AMCG00017331 NA other downstream 225219 53915125 ~ 53936482 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location