AMCG00017330 (celsr3,LOC107591847,LOC107679402)


Basic Information

Item Value
gene id AMCG00017330
gene name celsr3,LOC107591847,LOC107679402
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53817272 ~ 53821473 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017330
atgggagagggagggagatggaaAGGGAGGCccagggagggagaggtgggggaaggtggggagggagagagagagaaggagggattTGGAGATGCTGgggatggaggagagagagagggagacggggaAGAAGGGAGGCCgggggagacagagggagagttGGAGAGAGACTGGGACAGGGAGGCGAGGTtgaaggagggggaggaggggatgGGACGCACTGCCACGGTGTCCAGATCCCGCCGCGCCGCCAACCGGCACCCCCACTTCCCGCAGTACAACTACCAGGTGCAGGTGGCGGAGAACCAGCCGCCTGGCACCTCGGTCATCGACATGGCAGCGCAGGACCCTGACCCAGGCGAGGCGGGGCGTCTCAGCTACAGCATGGCGCCGCTCATGAACAGCCACTCCACCGAGTACTTCCACATCAACCCGACCAGCGGCCTGCTCACCACCGCCAAGGTGCTGGACCGCGAGCACATGGACCTGCACTACTTCCGGGTCACGGCGCTGGACCACGGATCCCCCCGGCTGTCCGCCACCACCATGGTCGCCATCACGGTGTCAGACCGCAATGACCACGGCCCGGTGTTCGAGCAGAGCGAGTATCGCGAGACCATCCGAGAGAACGTGGAGGAGGGCTACCCCATCCTGCAGCTGCGTGCCACCGACCTGGACGCCCCCTCCAACGCCAACATCCGCTACCGCTTCGTGGGGGAGCCATCCGCGCCCGGCCGTGCCGCCTTCGAGATCGACCCGCGCTCCGGGCTGATCACCACAAGGGGCCCGGTGGACCGCGAGAGCACGGAGAGGTACGCGCTGGTGGTGGAGGCCAGCGACCAGGGCAAGGAGCCGGGCCCGCGCTCGGCCAGCGTGCGCGTCTTCATCACCGTGCTGGATGAGAACGACAACGTGCCACAGTTCAGCGAGAAGCGCTACGTGGTGCAGGTGCGGGAGGACGTGCGGCCGCACTCCGAGGTCCTGCGGGTCAGTGCCTCGGACCGCGACAAGGACAGCAACGCCGTGGTCCACTACAACATCATCAGCGGGAACAGCCGGGGGCAGTTCTCCATCGACAGCGTGACCGGCGAGATCCAGGTGGTGGCGCCGCTGGACTTCGAGTCGGAGCGCGAGTACACGCTGCGTGTGCGTGCCCAGGACAACGGCCGGCCGCCGCTGTCCAACAACACGGGCATTGTGAGTGTGCAGGTGACTGACGTCAACGACAACGCGCCCATCTTCGTCAGCACGCCTTTCCAGGTGACGGTGCTGGAGAGCGCGCCGGTTGGCCACTCCATCCTGCACGTGCAGGCCATTGACACGGACGCCAGTGACAACGCGCGGCTGGAGTACAAACTGACCGGCACAGCGCCTGACACGCCCTTCGTCATCAACAGTGCCACGGGCTGGGTGTCGGTGAGCTCGGCGTTGGACCGTGAGTCCGTGGAGCACTACTTCTTCGGCGTGGAGGCGCGGGACTACGGCACGCCCTCCCTCTCCGCGTCCGCCAGCGTCACCATCACCGTGATGGACGTCAACGACAACCGTCCGGAGTTCCTGCAGCGTGAGTATTCCGTGCGGCTGAACGAGGACGCGTCCGTGGGCACCAGCGTGGTCAGTGTGACAGCGGTGGACCGCGACATCAACAGTGCCGTGACCTACCAGATCACCGGCGGCAACACGCGCAACCGCTTCTCCATCAGCACGCAGGGCGGCGCGGGACTTCTGACCCTCGCCCTGCCGCTTGACTACAAGCAGGAGCGCCGCTACGTACTCACAGTCACCGCCTCCGACCGCACACTGCACGACACCTGCCAGGTGCACGTCAATATCACGGACGCCAACACACACCGGCCCGTTTTCCAGAGCGCGCACTACTCCGTGTCGGTGAACGAGGACCGGCCACCCGGCAGCACGGTGGTGGTCATTAGCGCGACGGACGAAGACGTGGGTGAGAACGCGCGCATCACTTACTTCCTGGAGGACAACATCCCGCAGTTCCGCATTGACCCGGCTACCGGCGCCATCACGCTACAGACCGAGCTGGACTACGAGGACCAGCTGACCTACACGCTGGCCATCACCGCACGCGACAACGGCATCCCACAGAAGTCCGACACCACCTACGTGGAGATAAACGTGAACGACGTGAATGACAACGCTCCGCAGTTCCTCAGCCCACGCTACCAGGGAGCCGTGAGCGAAGACGCGCCACCCTTCACCAGCGTGTTGCAGATCTCCGCCACCGACCGCGACGCCCACGCCAACGGCCGTGTGCAGTACACCTTCCAGAACGGCGAGGACGGGGATGGCGACTTCACCATCGAGCCCACCTCTGGCATCGTGCGCACCGTGCGCCGGCTGGACCGCGAGAGCGTGCCCTTCTACGAGCTCACCGCCTTCGCCGTGGACCGCGGCATCCCCGCCCAGCGCACGCCCGTCCACATCCAGGTCACCGTGCTGGACGTCAATGACAATGCGCCTGTGTTCCACGCTGATGACTTCGAGGTGTTCGTGAAGGAGAACAGCGCGGTGGGCTCCGTGGTGGCACAGATCACCGCCACTGACCCGGATGAGGGCGCCAACGCGCAGATCATGTACCAGATTGTGGAGGGCAACATCCCTGAGATCTTCCAGATGGACATCTTCTCCGGGGAGCTGACCACGCTGATCGACCTGGACTACGAGGCCCGCTCGGAGTACGTCATCGTGGTGCAGGCCACCTCTGCGCCGCTGGTCAGCCGCGCCACCGTGCGCATCAAGCTGGTGGACCAGAACGACAACGAGCCCGTCCTGCAAGACTTCAAGATCATCTTCAATAACTTTGTGTCCAACCGTTCCAACAGCTTCCCCAGCGGCGTGATTGGGCGCGTGCCGGCGCGGGACCCCGACGTCAGTGACCGCCTCTACTTCTCCTTCAGCAGCGGCAATGAGCTCAACCTGCTGCTGCTCAACCACACCAGCGGGGAGCTGAGGCTCAGTCGCAAGCTGGACAACAACCGGCCTCTCGTGGCCTCCATGGTGACCGGCTGA

Function

symbol description
celsr3 Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Acts upstream of or within gamma-aminobutyric acid signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain; eye; and muscle. Orthologous to human CELSR3 (cadherin EGF LAG seven-pass G-type receptor 3).

NR:

description
PREDICTED: cadherin EGF LAG seven-pass G-type receptor 3-like

GO: NA

KEGG:

id description
K04602 CELSR3; cadherin EGF LAG seven-pass G-type receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017330 True 3033 mRNA 0.65 2 53817272 53821473

Neighbor

gene id symbol gene type direction distance location
AMCG00017323 NA coding upstream 82297 53722534 ~ 53734975 (+)
AMCG00017319 LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863 coding upstream 127366 53674878 ~ 53689906 (+)
AMCG00017314 NA coding upstream 147500 53659498 ~ 53669772 (+)
AMCG00017311 NA coding upstream 310075 53480838 ~ 53507197 (+)
AMCG00017305 NA coding upstream 388211 53419540 ~ 53429061 (+)
AMCG00017326 celsr3,LOC106566780 coding downstream 9398 53830871 ~ 53834907 (+)
AMCG00017324 NA coding downstream 55113 53876586 ~ 53883504 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding downstream 192088 54013561 ~ 54033037 (+)
AMCG00017336 NA coding downstream 215041 54036514 ~ 54056665 (+)
AMCG00017340 NA coding downstream 332134 54153607 ~ 54170510 (+)
G19838 NA non-coding upstream 1196 53815845 ~ 53816076 (+)
G19836 NA non-coding upstream 3285 53813785 ~ 53813987 (+)
G19789 NA non-coding upstream 143458 53671984 ~ 53673814 (+)
G19751 NA non-coding upstream 283398 53452130 ~ 53533874 (+)
G19729 NA non-coding upstream 407972 53408965 ~ 53409300 (+)
G19889 NA non-coding downstream 91345 53912818 ~ 53914877 (+)
G19899 NA non-coding downstream 127285 53948758 ~ 54041033 (+)
G19887 NA non-coding downstream 137990 53959463 ~ 53961838 (+)
G19958 NA non-coding downstream 235387 54056860 ~ 54057920 (+)
G20006 NA non-coding downstream 349742 54171215 ~ 54171423 (+)
AMCG00017325 nckipsd other upstream 11476 53794626 ~ 53805796 (+)
G19829 NA other upstream 24578 53790547 ~ 53792694 (+)
G19754 NA other upstream 280808 53503432 ~ 53536464 (+)
G19683 NA other upstream 477617 53335909 ~ 53339655 (+)
AMCG00017287 NA other upstream 983230 52821061 ~ 52834042 (+)
G19854 NA other downstream 32434 53853907 ~ 53855839 (+)
G19860 NA other downstream 42635 53864108 ~ 53864718 (+)
AMCG00017331 NA other downstream 93652 53915125 ~ 53936482 (+)
G19896 NA other downstream 118064 53939537 ~ 53947618 (+)
G19956 NA other downstream 233327 54054800 ~ 54055175 (+)

Expression


Co-expression Network