AMCG00017331


Basic Information

Item Value
gene id AMCG00017331
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53915125 ~ 53936482 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017331
ACGGTGGGGGGCAAGACCTACGTGGGTGAAGTGAAGGAGAAAGAGGTGGCAAGACAGCAGTACGACAAGGCAGTGTCCCGCGGAGAGACCGCCGGCCTGgtggtgAATGGCTATTTTGTTCATTACTTCGCTCCCACCATCGACTTACGGATTCCCAAGAGTGTGGTGTTTGTCATCGACCGCAGTGGCTCAATGAGCGGCAGCAAAATCATACAgACACACGAGGCTCTGCTGCAGATCCTGGGCGACATCAACGAGCAGGATCACTTCGGGCTGATCTCGTTCGACAGCAGTGTGTCCCTGTGGAAGGAGACGCTGGTCAAGGCCAGTCCTGGCAACCTGGAGGAGGCCAGAGCCTTCGTAAAGAGCATCACTGCCCGAGGCGccACGGACATCAACGAGGCTGTGATGCAGGGCGCCCAGCTGCTGTCCAGGGCCAGGGAGGACAAGAGCATCCCTGAGTTCAGCGCCTCCATCCTCATCCTGCTGACCGATGGAGATCCCACCTCAGGGGTCACTAATCTGGATCAGATCCAGGCCAATGTGAGGCAGGCCATACAGAAGAAACACACGCTCTACTGCCTCGGCTTCGGCTTCGATGTCAACTACAAGTTCCTGGAGAAGATGGCGCTGGAGAACGGGGGCGTGGCCCGCAGGATCTACACACACTCAGACGCAGCTCTGCAGCTGAAGGGTTTCTATGAGGAAGTGGCCACTCCTCTGCTGCTGGAGGTGGAGGTGCTGTTTCTGCATCAGGGCGTGGCCAACCTGACCCGCAGCTCCTTCAGCCAATACTACAACGGCTCCGAGATCGTGGTGGCCGGGCGCCTCCTCGACAACAGTCTGGACACTCTGGTGTCAGAGGTCCAGGCCCAGTCTAGCAATGCCAAGGAGATGTTCCGCCTGGAGGCCCCGGTGGCGCCGGAGACGGGCTTCCAGGACGAGCAGTACATCTTCGGGCAGTACATCGAGCGCCTGTGGGCCTACCTCACCGTGCAGCAGCtgctggagagagaGCTGCTGGTCAGTGATCAGGAGAAGGCACAGGTCCGTGGCCGGGCCCTTGAACTCTCCATACAGTACAACTTCGTGACCCCGCTGACCTCCATGGTGGTGACCAAGCCTGAGGACGGGCAGAGCTCTGGACCCCAGGTGGCTGAGAAGCCCAAGGAGGAGCAAGACCTGGAAGAAACAAATAGAGACATGTCCTTCACGAAGTCCAGTGGTGAGAGGCTGTGTcctttaaattcaattaatctcaattcCTGCTCAGCATGA
>TU24680
actcactctgttgtctgtgtgttggcAGGACGGTGGGGGGCAAGACCTACGTGGGTGAAGTGAAGGAGAAAGAGGTGGCAAGACAGCAGTACGACAAGGCAGTGTCCCGCGGAGAGACCGCCGGCCTGGTCAGATTACTGGATAATAAAACCCTTCAGAAAAGCCTTCATTGCTTCCCAGGTTACTCCTGCAGTGGGGGAGGAGGATACATTTGTTTCTATGTAAAGATCAATTTGAGCTTTTAGAGCGGACCTCAATTCTTCTTCTTGACTGGCATTAAATTTCCATCTTGGTGATTTGTCTGATTTTGTAAAAGGGAGTAATCGCAGTGATACCTGAGCATGGTCTGACAGCAATATTCCCAATTATACATGTGAGGGTGgaattaattaaagattttgATATTAGAAAAAATCTATTCTAGAGAATACATTATGAGGGGAAGAATAAAATGTGTAGTCTCTTTCTTTAGGGTTTTGTAATCGCCAAATATCAACTAGGCCTAAACCATTACACATACCCTGCAGGACCCTTAATGACCTAGACGTACAGCAAACTGATGGGGAACTACGATCCAAAATTGGGTCAAGCACCTGGTTAAAGTCTCCGCCTATTATAATTGGATATTGCGCTAAATCACTTAGCTAAGTTTCAAGATCCTCAAAAAAAGTAGGATTATCACCACTTGGGGCATAAACGTTGTCTAGAATTATTTTGTGGCCTTGTATCTCAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017331 True 1278 mRNA 0.58 8 53915154 53936482
TU24680 False 733 lncRNA 0.42 2 53915125 53924054

Neighbor

gene id symbol gene type direction distance location
AMCG00017324 NA coding upstream 31621 53876586 ~ 53883504 (+)
AMCG00017326 celsr3,LOC106566780 coding upstream 80218 53830871 ~ 53834907 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding upstream 93652 53817272 ~ 53821473 (+)
AMCG00017323 NA coding upstream 180150 53722534 ~ 53734975 (+)
AMCG00017319 LOC106566567,LOC105013928,LOC102296397,LOC101473935,LOC102778284,LOC103370863 coding upstream 225219 53674878 ~ 53689906 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding downstream 77079 54013561 ~ 54033037 (+)
AMCG00017336 NA coding downstream 100032 54036514 ~ 54056665 (+)
AMCG00017340 NA coding downstream 217125 54153607 ~ 54170510 (+)
AMCG00017347 NA coding downstream 268650 54205132 ~ 54208721 (+)
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding downstream 388854 54325336 ~ 54335011 (+)
G19889 NA non-coding upstream 248 53912818 ~ 53914877 (+)
G19838 NA non-coding upstream 99049 53815845 ~ 53816076 (+)
G19836 NA non-coding upstream 101138 53813785 ~ 53813987 (+)
G19789 NA non-coding upstream 241311 53671984 ~ 53673814 (+)
G19751 NA non-coding upstream 381251 53452130 ~ 53533874 (+)
G19899 NA non-coding downstream 12276 53948758 ~ 54041033 (+)
G19887 NA non-coding downstream 22981 53959463 ~ 53961838 (+)
G19958 NA non-coding downstream 120378 54056860 ~ 54057920 (+)
G20006 NA non-coding downstream 234733 54171215 ~ 54171423 (+)
G20028 NA non-coding downstream 406920 54343402 ~ 54345777 (+)
G19860 NA other upstream 50407 53864108 ~ 53864718 (+)
G19854 NA other upstream 59286 53853907 ~ 53855839 (+)
AMCG00017325 nckipsd other upstream 109329 53794626 ~ 53805796 (+)
G19829 NA other upstream 122431 53790547 ~ 53792694 (+)
G19754 NA other upstream 378661 53503432 ~ 53536464 (+)
G19896 NA other downstream 3055 53939537 ~ 53947618 (+)
G19956 NA other downstream 118318 54054800 ~ 54055175 (+)
G19961 NA other downstream 127876 54064358 ~ 54066187 (+)
G20013 NA other downstream 371313 54307795 ~ 54392591 (+)
AMCG00017357 NA other downstream 487071 54423553 ~ 54452054 (+)

Expression


Co-expression Network