AMCG00017340


Basic Information

Item Value
gene id AMCG00017340
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54153607 ~ 54170510 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017340
ATGTCCGCCCCGGGGGACAGCGGCCGGACCCTGAACTTCAACGTGGGCGTGCTGGGCCATGTGGACAGCGGCAAGACCTCCCTGGCCCGGGCGCTGAGCAGCACCGCCTCCACGGCCGCCTTCGACAAGAACCCGCAGTCCCGGGAGCGGGGCATCACGCTGGACCTGGGCTTCTCGTCCTTCTCCGTGCCGCTGCCGGAGCACCTGCGGGGGCCCTGCCAGGACCGGGGCTTCGACAGCCTGCAGGTCACCCTGAACGATGCAGACAGGGATCGCCCCGGAGAGGGAGCTACCAGAGGGAAAGAGACGGAtccctttctttccttctctccctctccctttcctctGTGTATTGCCTTGTGGTACAGTGGCAGTCAGCGGCAGTGTGTATTGCAGTGTGTTACTTGTGTCCAGATCATTGACCTGATGTTGCTGGTGGTGGACGTGACGCGGGGCGTCCAGACGCAGACAGCCGAGTGCCTGGTAATCGGGGAACTCACCTGCCCGCGGTTCCAGGGCTGCCCTGTGATCGCCGTGGCAGCGAGGCCGGGGGGTCCTGAGGCCCCCGACAGTGAGCAGCCCCAGGGAGTGCCTGAGCTGATCGAGTTGCTGAAGGCGCATACGTACCTCCCTCACAGAGACGCGTCGGGGCCGTTCCTCATGGCAGTGGATCACTGCTTCTCCATCCGTGGCCAGGGCACCGTCATGACCGGCACCGTCCTGCAGGGGGCAGGGGACCGGGTGGGCGTGTGCGTGACGCAGTTCGACCCGCGGCAGCTGGAGCGCGGCGTGGTGTGTGCGCCCAGCTCCCTGCCCACGCTGCACGCCGCTGTCGTCTCCGTGGCCAAGATCAGCTACTACCGCGGCACGCTGGCCACCAAGAGCAAGTTCCACATCACCGTCGGCCACGAGACCGTCATGGCTAGGGTCACCTTCTTCGGCCTGCCGCCCTCCGACTCCGCTCCGCCAGCCAATGACGCATCCACACCAGCCCCAAACCCCGCCCAACCGGCCCCTGACCCCACCTTTACAGAATCTTCACATTCTGGCCCTGCCCAGATGCCTGGCTCCTCCCCTTCCCCAGATGACAGCCACACCTCCTTCTCCTTCCAGAGGGAGTACCTCTACCAGGAGGAGTATGTGATTGGCCGGCCTGCGCAGGGGGCGGAGTCAGGCTCAGGCCGGGATCCTGAACAGTGGGCGCTGCTGGAGTTTGAGAAGCCGGTCACATGTCCCAGACGCTGCTTGGTGATTGGCTCCAAGCTGGACACGGACATTCATGCCAATACCTGCCGCCTGGCATTCCAAGGGCGTGTGACGGATGACTACACTGTGATTGGCAGAAACCTTTTCAAGAAGGAGACCAACCTGCAGCTCTTTGTGGGGTTAAAGGTCACGCTGTCCACGGGGGAGAAGGGGGTCATCGAGGGGGGGTTCGGACAGAGTGGCAAGTTCAAGATCCGTGTGCCAGttcctgttctctccctctctctgtctgggtCAGTGTGTATTCAGGATGTGGTGAGGGAATCGTCGGCCCTGGATCCTGAATCCCATTTCCAGCGCATTCCTGGAATTCCGCTCTGGGAATTCCGGCCGGGCCTGAGCGCCGAGACCAAGCAGCTGCTGTCCACCAGCTCTAAGAAGAAATCGAAGGGCGGGGCCAAGGGGGAGGCAGCCAGAGAGGGCGAGGCCAAGACGGATTCCCAGCCAATCACCATTCGCCTCAGCTTCAAGAGATACATCTTCGACCCCCACAAGAAAATGGTCCAGTCCTGA

Function

GO: NA

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017340 True 1779 mRNA 0.63 9 54153607 54170510

Neighbor

gene id symbol gene type direction distance location
AMCG00017336 NA coding upstream 96942 54036514 ~ 54056665 (+)
AMCG00017335 LOC108435819,LOC108440644,LOC107712078,LOC107721176 coding upstream 120570 54013561 ~ 54033037 (+)
AMCG00017324 NA coding upstream 270103 53876586 ~ 53883504 (+)
AMCG00017326 celsr3,LOC106566780 coding upstream 318700 53830871 ~ 53834907 (+)
AMCG00017330 celsr3,LOC107591847,LOC107679402 coding upstream 332134 53817272 ~ 53821473 (+)
AMCG00017347 NA coding downstream 34622 54205132 ~ 54208721 (+)
AMCG00017349 rab7a,rab7,LOC108254780,LOC106518505,LOC105017315,LOC107093905 coding downstream 154826 54325336 ~ 54335011 (+)
AMCG00017354 NA coding downstream 165430 54335940 ~ 54343047 (+)
AMCG00017350 ARPC4,arpc4,LOC103385929,LOC107094019,LOC107753787 coding downstream 182196 54352706 ~ 54357989 (+)
AMCG00017351 NA coding downstream 189499 54360009 ~ 54366128 (+)
G19958 NA non-coding upstream 95687 54056860 ~ 54057920 (+)
G19899 NA non-coding upstream 112574 53948758 ~ 54041033 (+)
G19887 NA non-coding upstream 191769 53959463 ~ 53961838 (+)
G19889 NA non-coding upstream 238730 53912818 ~ 53914877 (+)
G19838 NA non-coding upstream 337531 53815845 ~ 53816076 (+)
G20006 NA non-coding downstream 705 54171215 ~ 54171423 (+)
G20028 NA non-coding downstream 172892 54343402 ~ 54345777 (+)
G20086 NA non-coding downstream 381630 54552140 ~ 54555325 (+)
G20136 NA non-coding downstream 444731 54615241 ~ 54615448 (+)
G20177 NA non-coding downstream 562510 54733020 ~ 54737869 (+)
G19961 NA other upstream 87420 54064358 ~ 54066187 (+)
G19956 NA other upstream 98432 54054800 ~ 54055175 (+)
G19896 NA other upstream 205989 53939537 ~ 53947618 (+)
AMCG00017331 NA other upstream 217125 53915125 ~ 53936482 (+)
G19860 NA other upstream 288889 53864108 ~ 53864718 (+)
G20013 NA other downstream 137285 54307795 ~ 54392591 (+)
AMCG00017357 NA other downstream 253043 54423553 ~ 54452054 (+)
G20099 NA other downstream 357242 54527752 ~ 54529204 (+)
G20085 NA other downstream 402964 54573474 ~ 54582399 (+)
G20156 NA other downstream 492801 54663311 ~ 54664526 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033071 eefsec coding NC_007117.7 CM002890.2 40822587 ~ 40832245 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_09882272_09889768 EEFSEC coding CI01000340 null 9882103 ~ 9889768 (-)