G10692


Basic Information

Item Value
gene id G10692
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 3971886 ~ 3973511 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU13262
ATTAACCAAACAAAAcgtgtcatttgtattttatattgggGGATGAGGCTTCGGGGGTCCACAGGTGTATTAAAGCCCGGAGCGTAGGCCCGGGGGCGAGCCGGGGAGGGAAGAGGTTCGCGGGCCCTGGCGGCCTCCTCCGTTTTTGGAGAAGGTTTTCAGAACCTGTTTATAGGTTCAAAGGTATAAAACTGCCTAAGCTAGATCCCTCTGTGAATACCTCAATATAAACACGATTGTTGAAATATGTAATCATGTTTAAGGTGTTTGACGCTATAAATGGGCCACCTGTAggtgaaataactaaatacatattttgtttgtatagaggtggaaagacaacacaaacagcctTGTAGACTCACATTACACCAGATCCCTGTGCTATAATCAAGTACACAATACTaactccatttaaaaacaaagccgGTAAGATGTGCCAAATGTTTAAAGACGATCCAAAATATGGCGATAAAAAGGTCAAGTTAAAGAATGGGACATTTTTACATATAGAATACAtgggaatataaatatatatacacacatatacatatgttttcGTTTTCATTTGATCTATTTAAGGCTATAATCCACCTCATACATACCTCCTATAGGGCAattctaaatgttacaattaattCTATTGTCTGACTTTCCtctattatttgaatatttgtctttaaaaaaatctttacacTCGATATCCGTAAAAGAAAATTAGGTATATAGTCAATGATTCAGCTAAACAAAAAAGCACCCCTACTACCTAGGTCCTCGGTCTGTGCTACCAACCAGAGGAGCTCTTAGAGGCGCCTGCTCTGCCCCTGCAGGGGTTTTGATAAGCGGCTCCACCCTGGGCTGGGGCCCCTAACCTGTGACTGATGCTTATTACCGATCTTGAGTTCACAGCTCTCTCATATCAAACCCCTGATCTGATATGAATGTGCAGTTCTTTTCAGGATGCTCAACCAGAAAGTAAAcggtaaagaaaacaaataaataaataaatagtaattcaAACTTATGTAATGAGTCAGAGTTTTCACAATCATGTTTCGTGACtttttaacacacagacacagttagATCCCTTCCACCCAGGCTGTGGTCACCCGCtattcagttttcttatttgaaCGTCACagatgtgttgttgtttctaagCATTTATTAGGTCTCTGTTTTAGGGCCTCAACTTAGTTTACTTTATTGTCACAATGactaaaatgttgttgttttttttatttaaagttacacatttgtttcttttatcttactttgaaaacctttttcaaCCGACTAATGTCATAAAGTCGGAAAGTCTTTGTAAACAGTTATTTCTGATGTGTTTGAGGTATTTGGTCTAGTTATTTGAAATTACATACTAATCTAAAGCAGATTCCCCCTGAGTATTTGTTATAGGCTCCCTGTTTGTATTCaacattgtgatttataataatgcatttgattaaggTTGAATAaatccaaaacaataaaataaaataaaatcttgatctttgttaaaatgaaccTTTGTCTTTAGCCTGTATTTTACTGGTAAGTCAAATCCCACTTAAAAATAGCTTTTACATCGGGCCCAAAAGCCAAATATGTCCACCAGTATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
ko04138 Autophagy - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU13262 True 1626 lncRNA 0.37 1 3971886 3973511

Neighbor

gene id symbol gene type direction distance location
AMCG00016048 NA coding downstream 24451 3928734 ~ 3947435 (-)
AMCG00016050 NA coding downstream 136531 3823251 ~ 3835355 (-)
AMCG00016045 NA coding downstream 187390 3783534 ~ 3784496 (-)
AMCG00016047 NA coding downstream 303328 3622918 ~ 3668558 (-)
AMCG00016042 NA coding downstream 469035 3497702 ~ 3502851 (-)
AMCG00016053 lhfp,LOC105029023,LOC107670626,LOC107740377,LOC107593461 coding upstream 131220 4104731 ~ 4105731 (-)
AMCG00016058 NA coding upstream 402934 4376445 ~ 4378160 (-)
AMCG00016059 foxo1 coding upstream 451477 4424988 ~ 4427749 (-)
AMCG00016063 NA coding upstream 469905 4443416 ~ 4451855 (-)
AMCG00016064 LOC105011210,LOC107718790 coding upstream 502828 4476339 ~ 4490665 (-)
G10673 NA non-coding downstream 59614 3869724 ~ 3912272 (-)
G10624 NA non-coding downstream 229624 3741593 ~ 3742262 (-)
G10592 NA non-coding downstream 424795 3490758 ~ 3547091 (-)
G10596 NA non-coding downstream 449851 3514439 ~ 3522035 (-)
G10556 NA non-coding downstream 593301 3378378 ~ 3378585 (-)
G10696 NA non-coding upstream 4048 3977559 ~ 3979117 (-)
G10698 NA non-coding upstream 14142 3987653 ~ 3987955 (-)
G10715 NA non-coding upstream 193267 4166778 ~ 4170338 (-)
G10735 NA non-coding upstream 381342 4354853 ~ 4355296 (-)
G10740 NA non-coding upstream 397954 4371465 ~ 4373721 (-)
AMCG00016049 NA other downstream 51383 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 429350 3528842 ~ 3542536 (-)
G10478 NA other downstream 936703 3034422 ~ 3035183 (-)
AMCG00016029 NA other downstream 1125529 2784125 ~ 2846357 (-)
G10420 LOC101154678 other downstream 1261201 2710399 ~ 2710685 (-)
AMCG00016074 NA other upstream 930345 4903856 ~ 4929900 (-)
AMCG00016110 ufm1,LOC107701138 other upstream 3707400 7680911 ~ 7753437 (-)
AMCG00016119 NA other upstream 4145710 8119221 ~ 8124033 (-)
G11326 NA other upstream 4218035 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 4850034 8823545 ~ 8827760 (-)

Expression


Co-expression Network