G11633 (hmgb1,LOC105901051,LOC103353583)


Basic Information

Item Value
gene id G11633
gene name hmgb1,LOC105901051,LOC103353583
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9435802 ~ 9498753 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14397
gaaaaaacaaaaccattttttaaaaaaagggtttatttactTCAGAAGCATTCAGAATGTCAACAAAAacagctgcttttttttctccttgcaATTACAGAGTGGTATTCAAAGTACAGTAAAAGAATTTTATGATAcggcaaattaaaaaaataaaaataaaaacacaaatactggAAACAAACTACAACCCCACGTAAAACTAGATTTTGTGCTGTGCACCACCAGAAAACCTGCAACTTCCATGCCATTTTACAACCCCCTTAAACTGTACCAGGCAAGGTTAGTGGCTTAGGAACTAccactaaaaacataaaataaaaataaaaaataaaaaaaatacagggcTATCTAAAGACACTTCCGTAGTGTtatctatacaaaataaagaaaagaaaaagaaacactgtaCAGCTTAAAAACAGATCATATACACagccttacatttttttttttctttgtttttttttttttttttttttt
>TU14398
gaaaaaacaaaaccattttttaaaaaaagggtttatttactTCAGAAGCATTCAGAATGTCAACAAAAacagctgcttttttttctccttgcaATTACAGAGTGGTATTCAAAGTACAGTAAAAGAATTTTATGATAcggcaaattaaaaaaataaaaataaaaacacaaatactggAAACAAACTACAACCCCACGTAAAACTAGATTTTGTGCTGTGCACCACCAGAAAACCTGCAACTTCCATGCCATTTTACAACCCCCTTAAACTGTACCAGGCAAGGTTAGTGGCTTAGGAACTAccactaaaaacataaaataaaaataaaaaataaaaaaaatacagggcTATCTAAAGACACTTCCGTAGTGTtatctatacaaaataaagaaaagaaaaagaaacactgtaCAGCTTAAAAACAGATCATATACACagccttacatttttttttttctttgttttttgtattttttttttttttttttttaaggagtgAAGTGTGTACAGGGGGGttaaatgctttataaacaAGAAACTAAGCTCTAATAGTAACTGATctattcatcatcatcttcctcatcatcatcatcctcctcCTCGTCATCATCGTCGTCGTCATCGTCATcatcgtcctcctcctccttcttcttcttggccTTTTCCACCTTGGCAGGTGCTTTCTTGGCAGGTGCCTCGGGCTTGCCCTTGGCACGGTAGGCAGCAATTTCCTTTTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCGTATGGCTGCTTGTCCTCAGGGGCGGTCTTATTCCACATCTCTCCCAGTCTTTTGGCAACATCCCCAATGGACAATCCGGGGCTCTCGCCTTTAACTTTTGGGCGAAAGTCAGCGCAGAATATGAAGAAAGCACGGGGGCCTTTTTGGTGCGTTGGGGTCTTTtgtcctcttcttcttctctcccTTGGGTGGTATGTAGGACTTCATTTCTCTTTCATAACGCACCTTGTCTAGTTTTGCAAGGTCTTCAAACTTGCCCTTCTCCTTGGCAGACATAGTCTTCCACCGCTCAGAGCACTTCTTTGAGAAATCAGAGAAGTTGACAGAGGCATCAGGATGCTTCTTCTTGTGCTCCTCCCGGCAGGTCTGCACGAAGTAGGCATACGAGGACATCTTGCCTCTTGGCTTTTTCGGATCACCTTTACCCATCTTGGATTAGTTATCTAAAGGCAATAACGCACAGGTCAGACGGCTGCACCCCGGCGCTGCTCAAGCAGCCGCGGAGGAAACGATTCCAGCGCCGAGCCGCGGCTCAAGTCGCaactctgctgctgctgctgccagccTCTCTTGCGACCGTTTCCTCTCAACTGGCTTCgggacagaaagaaagaaaggaaagagagagagagagatcccgGACTAAACATGTCCGCTTCCCAACTTCCCAGCAAACAACAAGGCAGAAACAGCGTCCAGCGCAGGACTCACCCGTCCCTGCGCAGCGGCAGCCCTGCCCGGCTAACCAGCACTAGCGCTGAGGTATAAGTTTTCATTGCGTTTTAAAACCATGTCCAAACaccttttttttctaaagcctAGAAGTGTAAACCTAAAAACGAaag
>TU14399
gaaaaaacaaaaccattttttaaaaaaagggtttatttactTCAGAAGCATTCAGAATGTCAACAAAAacagctgcttttttttctccttgcaATTACAGAGTGGTATTCAAAGTACAGTAAAAGAATTTTATGATAcggcaaattaaaaaaataaaaataaaaacacaaatactggAAACAAACTACAACCCCACGTAAAACTAGATTTTGTGCTGTGCACCACCAGAAAACCTGCAACTTCCATGCCATTTTACAACCCCCTTAAACTGTACCAGGCAAGGTTAGTGGCTTAGGAACTAccactaaaaacataaaataaaaataaaaaataaaaaaaatacagggcTATCTAAAGACACTTCCGTAGTGTtatctatacaaaataaagaaaagaaaaagaaacactgtaCAGCTTAAAAACAGATCATATACACagccttacatttttttttttctttgttttttgtattttttttttttttttttttaaggagtgAAGTGTGTACAGGGGGGttaaatgctttataaacaAGAAACTAAGCTCTAATAGTAACTGATctattcatcatcatcttcctcatcatcatcatcctcctcCTCGTCATCATCGTCGTCGTCATCGTCATcatcgtcctcctcctccttcttcttcttggccTTTTCCACCTTGGCAGGTGCTTTCTTGGCAGGTGCCTCGGGCTTGCCCTTGGCACGGTAGGCAGCAATCCTTTTCGTACTTCTCCTTCAGCTTGGCAGCCTTCTTCTCGTATGGCTGCTTGTCCTCAGGGGCGGTCTTATTCCACATCTCTCCCAGTCTTTTGGCAACATCCCCAATGGACAATCCGGGGCTCTCGCCTTTAACTTTTGGGCGAAAGTCAGCGCAGAATATGAAGAAAGCAGAcGGGGGCCTTTTTGGTGCGTTGGGGTCTTTtgtcctcttcttcttctctcccTTGGGTGGTATGTAGGACTTCATTTCTCTTTCATAACGCACCTTGTCTAGTTTTGCAAGGTCTTCAAACTTGCCCTTCTCCTTGGCAGACATAGTCTTCCACCGCTCAGAGCACTTCTTTGAGAAATCAGAGAAGTTGACAGAGGCATCAGGATGCTTCTTCTTGTGCTCCTCCCGGCAGGTCTGCACGAAGTAGGCATACGAGGACATCTTGCCTCTTGGCTTTTTCGGATCACCTTTACCCATCTTGGATTAGTTATCTAAAGGCAATAACGCACAGGTCAGACGGCTGCACCCCGGCGCTGCTCAAGCAGCCGCGGAGGAAACGATTCCAGCGCCGAGCCGCGGCTCAAGTCGCaactctgctgctgctgctgccagccTCTCTTGCGACCGTTTCCTCTCAACTGGCTTCgggacagaaagaaagaaaggaaagagagagagagagatcccgGACTAAACATGTCCGCTTCCCAACTTCCCAGCAAACAACAAGGCAGAAACAGCGTCCAGCGCAGGACTCACCCGTCCCTGCGCAGCGGCAGCCCTGCCCGGCTAACCAGCACTAGCGCTGAGGTATAAGTTTTCATTGCGTTTTAAAACCATGTCCAAACaccttttttttctaaagcctAGAAGTGTAAACCTAAAAACGAaag

Function

symbol description
hmgb1 Enables several functions, including DNA binding activity; DNA polymerase binding activity; and lipopolysaccharide binding activity. Involved in several processes, including positive regulation of MAPK cascade; positive regulation of macromolecule metabolic process; and regulation of cell migration. Located in several cellular components, including cell surface; condensed chromosome; and extracellular space. Part of alphav-beta3 integrin-HMGB1 complex and transcription repressor complex. Implicated in amyotrophic lateral sclerosis. Biomarker of Kawasaki disease; cerebral infarction; congestive heart failure; and systemic scleroderma.

NR:

description
High mobility group-T protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14397 False 483 lncRNA 0.29 2 9435802 9498753
TU14398 True 1616 lncRNA 0.44 4 9496191 9498753
TU14399 False 1616 lncRNA 0.44 4 9496191 9498753

Neighbor

gene id symbol gene type direction distance location
AMCG00016154 NA coding downstream 8558 9420129 ~ 9427244 (-)
AMCG00016155 NA coding downstream 19077 9416522 ~ 9416725 (-)
AMCG00016152 NA coding downstream 25235 9406302 ~ 9410567 (-)
AMCG00016151 NA coding downstream 77072 9333693 ~ 9358730 (-)
AMCG00016148 rxfp2,LOC106591039 coding downstream 146478 9267201 ~ 9289324 (-)
AMCG00016162 NA coding upstream 177185 9675938 ~ 9683998 (-)
AMCG00016161 NA coding upstream 185413 9684166 ~ 9685154 (-)
AMCG00016166 NA coding upstream 208518 9707271 ~ 9711998 (-)
AMCG00016164 NA coding upstream 213380 9712133 ~ 9713118 (-)
AMCG00016165 NA coding upstream 268462 9767215 ~ 9767922 (-)
G11571 NA non-coding downstream 121355 9314000 ~ 9314447 (-)
G11482 NA non-coding downstream 376702 9055904 ~ 9059100 (-)
G11346 NA non-coding downstream 1103999 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 1114760 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 1261828 8173689 ~ 8173974 (-)
G11650 NA non-coding upstream 44755 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 90982 9589735 ~ 9594953 (-)
G11662 NA non-coding upstream 197020 9695773 ~ 9696054 (-)
G11675 NA non-coding upstream 469824 9968577 ~ 9968783 (-)
G11677 NA non-coding upstream 491854 9990607 ~ 9991140 (-)
AMCG00016134 NA other downstream 608042 8823545 ~ 8827760 (-)
G11326 NA other downstream 1241370 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 1311769 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1682365 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4505902 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1335659 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2267399 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2333675 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 2824408 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3351125 12849878 ~ 12870560 (-)

Expression


Co-expression Network