G12058


Basic Information

Item Value
gene id G12058
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 12387798 ~ 12391408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14892
aaacttccttcaaactggatgcacaaaattaaagaaaaaaaggtttcgATGGAGTGATACGACTCTGGGCAAGTAAGCAATCTgactaaaatgccaaaataccgaagtatccctttaagtaAGTTGGTACAAAGACTCTGTATATATTCAGCAAATAGACCCTTCAAAATGGGTCTTTCAAAATAAGATTTAAACCATTGAGGAGTTCAGACAAAGGCAATGGACAACTGTGTTCACGCAGTACAATATTTGGCATCTTCCCCCACAacattacagaaataataacttttaaatcCCGAAACACAGCCCGAAACATTGAGCAGACATAGCTGGACAATTAGCATGTTTATCCAGCGAAGGCCACAGATTCTCCACCAGTGAATCAGGGCCCTGCTGCTGCAGCTATGACACTTGAGATGTTTGCAGAGCTgtggttaaaaataatttcccattGGTCAGACAGCATACAGCCAAGTTTGCTCAGAGAAGTACTTTACCTTGTTTTCTTGATCTTCCTGATCGTCATCTGCATTTGactgaaaggaaaggaaagaaaaaaacaacaacaaattaaacgTCTGCAGATATGGTTTAAACCATAATCATGCTACGATACGCCTTCAGTCAAAAACAGACAGACGCAACAAAATTAATCTTCTCCCATTGAGGCTCAAAAAACGGAAATGGGTGTAAGTCCACGTTTGACATGCAGTGCAGGCCGGGTCACTAATGATTTATCTATACATCTCACCACCAATATAACTGCAACCACAGGTTACTCATCGATCGCCAATATGACAACTTGAATCACACAGGAGATTCCTCATGgagtcatttaaaacaatttccaGCTAGTCCTTCTCCTTCCTGAATTTTCAATGATTCGAATACAGAAACACATTAGGGGGGTTCACAGCCCTTTAGAGGTTAGGTTTCCCAAAGTAACCGTGTAAAGTCCCTTCTTCCACAAAGAAATACTGGTGACCGCAAGACGAGTAACTGAAATCAGGAGAGACGTTTCTAAAGTCTACCGGTTCGCTGCTGTGCCATTTTACCATTTGCgcattttttcttctgttagcTCTCATTGACATAAGGATAAGTATCCAAACGTATATGGatttatgggggggggggttaaatcatgcagacatttaaaaatggatatATTGGTAAAAAACTGTTCCTCTGATAATTTGGATGAGTCACAAATGAGTTTGGGTCATGGGCAGCACTGCAGTGAAAAAGAGAAAACCgttatgaaacaaaaaacaaagtggtTAAGGGTTGAAATCAGCACACAAGGTGAGGTTTAGATGTTTCTCTGAAGAGAATTACGGTCTGCTCCACTTCCTCTGCGGCCTCTTGCTTTTCACTCTCCTGCTCGCCGTCTTCTGCCTCTGTGGGACTTTCACCATTACACTCCTCAGCCTGTTTACAGAACCAACACAAGATTAGGTGATAAAAATAGCACACGTGAAAATAATCCTGGATGGGGCTGTTTTGGGTTTTCAAACGGAGGAGAGTGTTTCCACTCCTTGGGACTGTGTGATTTTTCTAAAGAGGTTAAATGCTGGCCTCTCTGTGGTTCTTTAGAATCATGGGAAACAAATCTTCAGGTGTCTGTTCCATGAAAGTTCACTGAAATTGAACTGCATTTAGGAATTTCAAGGTTTTAGCAGATTTAATTACATGACCTCAAACATAGAAAACCATACATAAGTAATAGTACTTCATCCAGATCCTTATCTTCCTAAAACAGTGACACACTGGTCAATGTTAATATCGCTATGAAACAAGGATATTCATCATCGGCATTCCTTGCTGCCTTCTGGCTGGCGCTTTACAGAATTATTTTATGAGACCTCAAACCTGActggaacaaaaacataataaaaatcaatcaacTTCTCTGCACAACATTATGCTGTCAGACAGAATTGGAAAGAGCAACTACAATCCCTTGCCAAAACTCTCCCAAAATTGCTCTGCTCGAGTCTAATTTGCACTTTGCATGAGAAAGTTCCCTCACAGCCCTCCAGGTGATCGGGGAGAGATCAAAAGTTCAGGTTTAGACCGTTCCTCTCGATCTGAGCGCCACTCATGTTTGACAGGGGACATCCTCTAGCTATCCTCAGAATCTATCAGCTGGATTCATCAGATTAAAAAGAACATGTGTGAACAGGGCTGGGGGCAAGTGCTCTCCATTAAATACCCTCTGCTGGTGTGCCAGCGTCTTATTAAAAATCCAAGCAAGATACAGAATTTAGACGGGGTTGCTGGGCACATATTCAGAGGTGGTTTCTcaacacagaaatgcagatCATCCACCACAGTTAGCCCTTGTTTTAGGTTGATTGGAGCTCAAACACAAGCACAGACTGAGGCTAGGTGAACTTCCAATCGTAGTGTTCAGTTTTGAACGTACTGCCCTTTACCACACTATGTAAagcatgaagaaaacaaacaggtgCTGGACAGTAAGGCCAAATAAATGATCTACGGTCTTATTAGGAACCTAGGCAGTTTCCAGAAAAGGAAACTCAATAGGGCTGCAGATACattgtttgtaaataaaactgcagatcTGAATCTGTTCTAGCTCTTAGCAAAGCAAACATTGTCTACATTAAATTCACTATACTGGAGATGTAACACAAACGGTTCATTAAACTCTTAAGTTTCTACACACCAATATCCTCCATGTCAGGCTCAGCATTCCCACTTGTAGGTGGTTATCAAAGAAATAGGTTAAAATCACAATTATGTGAACTTATAACATGTGTTAATCTGTCAAACAAGATGGACGCCAACCCACCTGTTGTCACTGACATTAATAAAGTCCAGAATGCATGCATGGATGTAGGGTTAGTAAAGGTCTTCCCACAACTTTCATCTTTTGACGTTAATATCATTGTGCATCACCCACAGTGGACAGAATTCAACTAGAGTAGAAAGGACAGAGGCAATGGTGCATCTGGTGGAATCATTACATGGAGACAACCAGGGTTATGTGCCAAAAGAGGGGAGAAACAGGACAGGAGGAGAGATGGTAAAAACAGGATAAAAGAGTGTATTACTGGTGTTTCAAGGTGTTCCTCTGGATCTTTCCCATTCTGGAGAATTAGAGCCTGTTCTGCCATCTTTGCTTCctgcaccTTTGACCCTGGGGGAGGTGCCAGACCCAGGAATGCAAAAACTCGATTATCTTCCTTGGCATCAAAGAACGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU14892 True 3230 lncRNA 0.41 2 12387798 12391408

Neighbor

gene id symbol gene type direction distance location
AMCG00016212 NA coding downstream 11270 12360575 ~ 12376528 (-)
AMCG00016209 NA coding downstream 67142 12296853 ~ 12320656 (-)
AMCG00016210 LOC106567911,LOC102798362,LOC104951736,LOC105923239,LOC107101883 coding downstream 91738 12264274 ~ 12296060 (-)
AMCG00016208 sacs,LOC106612984 coding downstream 151276 12208148 ~ 12236522 (-)
AMCG00016204 LOC104943497 coding downstream 444146 11906076 ~ 11943652 (-)
AMCG00016217 dscam,LOC106612992 coding upstream 81855 12473263 ~ 12499001 (-)
AMCG00016216 dscam,LOC105030490 coding upstream 122950 12514358 ~ 12531045 (-)
AMCG00016219 LOC106612992,LOC106581126 coding upstream 211476 12602884 ~ 12607201 (-)
AMCG00016227 NA coding upstream 336706 12728114 ~ 12734030 (-)
AMCG00016223 NA coding upstream 347343 12738751 ~ 12743780 (-)
G12046 NA non-coding downstream 32434 12354675 ~ 12355364 (-)
G12041 NA non-coding downstream 34417 12353160 ~ 12353381 (-)
G11996 NA non-coding downstream 148784 12238785 ~ 12239014 (-)
G11865 NA non-coding downstream 649199 11738345 ~ 11738599 (-)
G11858 LOC106904821 non-coding downstream 670381 11701591 ~ 11717417 (-)
G12096 NA non-coding upstream 247085 12638493 ~ 12638698 (-)
G12235 NA non-coding upstream 706583 13097991 ~ 13100224 (-)
G12359 NA non-coding upstream 1235847 13627255 ~ 13639150 (-)
G12358 NA non-coding upstream 1246895 13638303 ~ 13639590 (-)
G12373 NA non-coding upstream 1266035 13657443 ~ 13659659 (-)
AMCG00016211 NA other downstream 58765 12323161 ~ 12329033 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other downstream 440476 11832428 ~ 11947322 (-)
AMCG00016194 NA other downstream 606251 11766152 ~ 11781547 (-)
AMCG00016176 NA other downstream 1539987 10834412 ~ 10847811 (-)
AMCG00016134 NA other downstream 3560038 8823545 ~ 8827760 (-)
AMCG00016226 NA other upstream 458470 12849878 ~ 12870560 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other upstream 1151940 13543348 ~ 13559184 (-)
AMCG00016281 NA other upstream 2028948 14420356 ~ 14427290 (-)
AMCG00016293 NA other upstream 2393790 14785198 ~ 14791969 (-)
AMCG00016327 NA other upstream 4079203 16470611 ~ 16475170 (-)

Expression


Co-expression Network