G12812


Basic Information

Item Value
gene id G12812
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 15835194 ~ 15836468 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU15860
GGAAGTATTGATATTTTCTAGGCATCCAACCAGATGAAATACACAGATGGGAAAAATATCAAAAGGACACCGGCTTACCTGTAAATGCAGAGTGTTATCTTTCGTAATTGCCTCACTCAGCTCTTTATCAAGTGACTTCCCTCCATGTAATTTATGAGCATCTAAaatgcactctctctctgcttctgcGTGTTGAGAAGGCCTCAGCCGGTAGAACATGACATAGGCTGTGTCTTTGGGAAAGTGTGTGGTCACATTGGTCACGGATTCAAAGGAGGAAAAGGAGACCCAGGTGTCATTAAATAAGAACCACTGGTTTTCACTAGTGCGCTGAGGGCCCGACATTTGTGCATCGGCGTCCCTGTCAGACTGTTTCTCAGACGCCCCACCGTCACACTCCCTGGCGTAGCAGTAATAGTGTCCACTCTCAGACGACAATCCCGAGTGGACTACCACACTGCCCAGGTCATAGGTCATAGAGACATATGCACTGCCTTCCGTGCTGGACTCTGAACCCACGTTTCCAGGTCCGATTGACTCTGGTTCCCTTGAGGCGACCCTCACCGGGATCTTTAAAACTAACGGGATGGACACGTTGTCCAGGATCTTTTTTCTCCTCATGGTCCGTAGATCGAAGGAGAACCTCAGCAGAGTCAGGATGAGGTAGTGAGGCCCGTATGTCACTTCTACTACCTTCTCAGCGTTTTGCAAAGAGGAGCACTTCTGGCAATGGTACTTGTTCTCCCCAGTCAACATTTCAGGGGATAAAAAGAAATTGATCAGGTCAGGAACTGAAAGGGATGCTTCAGAAGTTCTGGTCTGTTCTCCAGAGGTGCCTGAAGACAAAGTGTGGTCAAGCCCTTTGTTTGAATCGAGAGACGCAGCTCTATCAGTGTGACCCACAGTTTCCACAGGAACGATCCTGACACCACGTTCTTCGGATGCCTCGTGCTTTCCGTCGCTCCTGACTGATGGAAACGTCTGTCTCTGAGCTTTGGAAGGACTCAGCCGTGATGGACCGATCGTTTCTACCATGGGTTGAGATGGACTGATGATGAAACTCCTCTCCAGGCTGTGATTGGGTGGAGGCAGGGCCAAGGACAGGTCAGTGAAGGCCTCCTCCCGGCGGGAGATATTGTGGCAGCGAAGGCACCGGATCCTAGTCACCATCTTCCCCCCGAACATCCTCTTGATCAGAGTCCCTTTTTCATCGGCTGCAGCGGCCGACGAAGAAGTCCTTGTCTTCTGGGAgcctctcttctcttcttcgTGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15860 True 1275 lncRNA 0.51 1 15835194 15836468

Neighbor

gene id symbol gene type direction distance location
AMCG00016315 NA coding downstream 10928 15804860 ~ 15824266 (-)
AMCG00016317 NA coding downstream 77171 15742441 ~ 15758023 (-)
AMCG00016316 NA coding downstream 94848 15735096 ~ 15740346 (-)
AMCG00016309 NA coding downstream 210742 15621056 ~ 15624452 (-)
AMCG00016308 trpc6a,LOC108429885,LOC108264040,LOC107691992,LOC107713306 coding downstream 238394 15577433 ~ 15596800 (-)
AMCG00016319 NA coding upstream 4791 15841259 ~ 15849112 (-)
AMCG00016321 NA coding upstream 53792 15890260 ~ 15902820 (-)
AMCG00016320 tenm4 coding upstream 84629 15921097 ~ 16030468 (-)
AMCG00016318 tenm4,LOC107740368 coding upstream 220641 16057109 ~ 16061718 (-)
AMCG00016328 NA coding upstream 571887 16408355 ~ 16409278 (-)
G12811 NA non-coding downstream 112 15834822 ~ 15835082 (-)
G12810 NA non-coding downstream 5627 15829355 ~ 15829567 (-)
G12809 NA non-coding downstream 6168 15828766 ~ 15829026 (-)
G12807 NA non-coding downstream 9957 15824911 ~ 15825237 (-)
G12743 NA non-coding downstream 229707 15547050 ~ 15605487 (-)
G12814 NA non-coding upstream 1367 15837835 ~ 15840792 (-)
G12838 NA non-coding upstream 387017 16223485 ~ 16223728 (-)
G12867 NA non-coding upstream 631149 16467617 ~ 16467819 (-)
G12868 NA non-coding upstream 631505 16467973 ~ 16468272 (-)
G12894 NA non-coding upstream 759210 16595678 ~ 16596220 (-)
AMCG00016293 NA other downstream 1043225 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 1407904 14420356 ~ 14427290 (-)
AMCG00016246 prdm15,LOC108413920,LOC102786849 other downstream 2276010 13543348 ~ 13559184 (-)
AMCG00016226 NA other downstream 2964634 12849878 ~ 12870560 (-)
AMCG00016211 NA other downstream 3506161 12323161 ~ 12329033 (-)
AMCG00016327 NA other upstream 634143 16470611 ~ 16475170 (-)
G12945 ucp2,ucp2b,LOC106567822 other upstream 1022073 16858541 ~ 16861179 (-)
AMCG00016345 NA other upstream 1029850 16866318 ~ 16870002 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 1427133 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 1701566 17538034 ~ 17541342 (-)

Expression


Co-expression Network