G13045 (rps3)


Basic Information

Item Value
gene id G13045
gene name rps3
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17241944 ~ 17246330 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16151
GGAAAACAGCTGATGGACATTTGACTTTAATAGTGCAGCTTTCATATTGTTCCAGGCATTTTGCAACAAgatcaatatattaatttgacaagtttgtaCACTACAAAGCTATCACCCACCGATAAACAGATCCCCAATTCTACAATCTGTAATtctctccattaaaaaaaaaaaagaaagccaggGAATgtcttttactgttttattgaaattttatACAGTTTATCCCCCGAGGACTTCCATCTTCAGGTGTCGATGGAAACCTGCAAGAGAGAACGCAGTTAAATACATGACCATGTGAACtactttatttcaaatgcattcctgcatattttaatcacttcaatcatttcaaattaaagcttTGAAAACCCCTCTCAGACAAATGCCTCTATGTCTTCAATTAATAAACACTCTGCTCTGGGGCCTGAACTCAGAGACACAGAACGTGCCCCTGAACCAAAACCCCAGAGTCAGGCCGTGTCCTGTTCCGACTCGTCATCGTATCATCACTGAAgggaactatatatatattatatatatatatatatacacacacacacacacaaattggaCTTGCCAAATACAGGGTGAATTAATATTCTATTATACATACTATTGCATAAGATTAACCACAGACTCGACAATGCCCAATCCTTGCCTCTGTAGGAGTCATATGTGCAGAATGATGTGATTCTCACCCTTATGCGGTGGCGACTGGTCCGCCCTGTGGCATGACAGGGGCCTCTGGCTTGGCACCCTTCTGCTCAGACATGGGGGTGGTGGGGAGGACCTCATCCTTGGGCTCCACAATGCTGACGTGGTCAGGAAGAGGCTTCTTGGGGCCAATCTTGCCACTGGGATCCCAAGGCAGCATGATCTTGACCTTGATTCCCAGCACACCTACAGGAGAGATTAGACCAGATTAGATTCAGTAAAAGCAAGACAAACTGCAGTGGATGACTGGGACAGTTTAGACTAGATTCCACGGGGGAAATTAGCACACAGGATAATTTAGATTTGACCTGCAATGTAATTATAAATTAGCTTTGGTAAGACTTCTTATTTGATAAGGTACGACAAGTGCTCTGTAAAGAAAACCGAACATGCTAATCATAAAAGCACATGCCAGTTTTAAACTACAAAGCAAGCCAATTTCCATTAAAGGAATAACAACAGtttcagttacattttgcaAGCACATAGAAAAGCAGCAGACCCTTCTCAGACAAATGCCTCTATGTCTTCAATTGATAAACACTCTGCTCCGGGGCCTGAACTCAGAGACACAGAACGTGCCCCTGAACCAGAACCCCAGAGTCAGGCCGTGTCCTGTTCCGACTCGTCATCGTATCATCACTGAAGGGAGGAAGACTGATTctcaatgaaaagcaaaaagtaCCATGGACATAGATATAAATCTCCTATACGAACAGGTACAGTAAATCAAAGATAAGCTTTAATACAGCAACCAAAAACCAGATAGCCAAGCGATTACATACCCTGCCTGAGCAAGACGTGGCGGACAGCAGTGTCAACGTAGTAGTTGACGGGGTCTCCACTGTGGATCATCAGGCCATCGACAAACTTCATGGACTTGGCTCTCTGGCCTCGGAGCTTGCCGGACACCACCACCTCGCAGCCCTTGGCCCCGCTCTCCATGATGAACCGCAGGACACCATAGCAGGCTCTGGAACACAAGCAGGCATGCGTCTTCAAATCACACACCCTTACACGCGCTTTAGCAATTGCGCCATTTTCGGATCAATAGGAAAGCTTTACAACATGATTCCAGGATTGTactatgtacatttttacactGACAAACTATAATCACTCATACATCACTAGACAGATTTCCAACAAAGGGGATCAATTTACACACAAGGTACTTTGGAGCACACAAGACCCTTCTCAGACAAATGCCTCGATGTCTTCAATTGATGAGGACAGGCTGCTCTGGGGCCTGAACCCAGGGACACAGAACGTGCCCCCAAGCCAGGACCCCAGAGACGGGCCGTGTCCTCTGTCCGACTCGTCATCGTCTCATCACTGAAGGCAACAGCTCTATCAAACTCATCAGCCATCCTACACACTGATAAGGGGAGGAGTACACTCTACTATAATCTACCGCTCTGGACAGCAAGAGAAAATTGGTTCTTAACACTGCAAGGAAGTGTGCCTTGACCAGTGGGTGAGGCAAATACCCTGCTCCCTATAGAGCTCATTTTTGGGATTCTCACAAAGGTGTACATTAAAGGACAGTGACTCGGGCTGGACCCGAGGCTCACCTGCGCACAGCCAGGCCTCCCAGCAGCTTGTAACGCAGGGACTCCGCCTGGGCGATGGCACACAACCCTCTGGTGGCAACCTTCTCCGCATACAActagagagagagtgaatggCTTTAATGCATGATCACCAAGCAGGGAGCGAGCAGGATTTCAGACTATCTATATGTGGAGCTCACCTCAACGCTGTTCTCTGGGAAGCCAAACCTCTTCTGCACCACAGCAGTCAGTTCACGGATGCGGCGGCCTTTCTCACCAAGAACATTCTGAGTCCTGGAACAATCACCACAATCAGAAACCCAGTTGTCTGCCAGCATTCGAAAAGGCAAAGATCCTGTTAATGCTGACAGTTTACAAGGACATGACTGTAGACTGAATGAGGAATACATGCTACTGATTGGACGTCAAGGTACATTCAAATCATAGGAGCACGAGTTGTACAGGTtgaacaatacaattacacagaCAAAGGCATCCAATCATTGCAAATGTGAGCACTTCTGCAACAGGGTCATTTAACATGCAATAAAACGTTTACTTACACTACAAgaacagttaatttaaaaagtacaacaCTGCTTTTATTAGTTTCAAGTAGTTTGCCACACAGACATTTCTGATCTCACTCAGTCCTCTGAGGCCAAGGGAGTCTTTTTAACCCATACTGTACTGCCTAGTGCAAGTATTAGAAACTTAAATCAGAAGACACTCATTATACAAatcttaattttacttttacgcAGGTTTACTTAAGGTATGATGTAGTAGTTGTGTGTACAAATGTATGAAGGCTTGCAAGATCCTTCTCAGACAAATGCCTCGATGTCTTCAATTGATGAGGACAGGCTGCTCTGGGGCCTGAACCCAGGGACACAGAACGTGCCCCCAAGCCAGGACCCCAGAGACGGGCTGTGTCCTCTGTCCGACTCGTCATCGTCTCATCACTGAAGGAAGCCGCTCTAACCATCACAAACTCAACAGTCAATCACTAAATCTTGAGAAAGTAAAGGGGATTGACTATGGCATGCAGTTAGGATAACACTGCTTCACCGTGCATCTGGGATGCGTTTTCGTCTGGGGATTGGGATCTCCGGCGGGTCGGGTCTCACCGTGTGGCCAGGATGATGATCTCGGTTCTGGTGGGAGTGACTCGCACCTCCACCCCGGAGTAGCCATCCTCTGCAAGCTCCCGAGTCAGAAACTCATTCAGCTCGGCTTTGAAGATGCCATCTGCAACAAACTCTTCTTGGAGATCTGGGCCGTCATCTTGCTTCGAGCCGC
>TU16154
GGAAAACAGCTGATGGACATTTGACTTTAATAGTGCAGCTTTCATATTGTTCCAGGCATTTTGCAACAAgatcaatatattaatttgacaagtttgtaCACTACAAAGCTATCACCCACCGATAAACAGATCCCCAATTCTACAATCTGTAATtctctccattaaaaaaaaaaaagaaagccaggGAATgtcttttactgttttattgaaattttatACAGTTTATCCCCCGAGGACTTCCATCTTCAGGTGTCGATGGAACCCTTATGCGGTGGCGACTGGTCCGCCCTGTGGCATGACAGGGGCCTCTGGCTTGGCACCCTTCTGCTCAGACATGGGGGTGGTGGGGAGGACCTCATCCTTGGGCTCCACAATGCTGACGTGGTCAGGAAGAGGCTTCTTGGGGCCAATCTTGCCACTGGGATCCCAAGGCAGCATGATCTTGACCTTGATTCCCAGCACACCCTGAGCAAGACGTGGCGGACAGCAGTGTCAACGTAGTAGTTGACGGGGTCTCCACTGTGGATCATCAGGCCATCGACAAACTTCATGGACTTGGCTCTCTGGCCTCGGAGCTTGCCGGACACCACCACCTCGCAGCCCTTGGCCCCGCTCTCCATGATGAACCGCAGGACACCATAGCAGGCTCTGGCACAGCCAGGCCTCCCAGCAGCTTGTAACGCAGGGACTCCGCCTGGGCGATGGCACACAACCCTCTGGTGGCAACCTTCTCCGCATACAActagagagagagtgaatggCTTTAATGCATGATCACCAAGCAGGGAGCGAGCAGGATTTCAGACTATCTATATGTGGAGCTCACCTCAACGCTGTTCTCTGGGAAGCCAAACCTCTTCTGCACCACAGCAGTCAGTTCACGGATGCGGCGGCCTTTCTCACCAAGAACATTCTGAGTCCTGGAACAATCACCACAATCAGAAACCCAGTTGTCTGCCAGCATTCGAAAAGGCAAAGATCCTGTTAATGCTGACAGTTTACAAGGACATGACTGTAGACTGAATGAGGAATACATGCTACTGATTGGACGTCAAGGTACATTCAAATCATAGGAGCACGAGTTGTACAGGTtgaacaatacaattacacagaCAAAGGCATCCAATCATTGCAAATGTGAGCACTTCTGCAACAGGGTCATTTAACATGCAATAAAACGTTTACTTACACTACAAgaacagttaatttaaaaagtacaacaCTGCTTTTATTAGTTTCAAGTAGTTTGCCACACAGACATTTCTGATCTCACTCAGTCCTCTGAGGCCAAGGGAGTCTTTTTAACCCATACTGTACTGCCTAGTGCAAGTATTAGAAACTTAAATCAGAAGACACTCATTATACAAatcttaattttacttttacgcAGGTTTACTTAAGGTATGATGTAGTAGTTGTGTGTACAAATGTATGAAGGCTTGCAAGATCCTTCTCAGACAAATGCCTCGATGTCTTCAATTGATGAGGACAGGCTGCTCTGGGGCCTGAACCCAGGGACACAGAACGTGCCCCCAAGCCAGGACCCCAGAGACGGGCTGTGTCCTCTGTCCGACTCGTCATCGTCTCATCACTGAAGGAAGCCGCTCTAACCATCACAAACTCAACAGTCAATCACTAAATCTTGAGAAAGTAAAGGGGATTGACTATGGCATGCAGTTAGGATAACACTGCTTCACCGTGCATCTGGGATGCGTTTTCGTCTGGGGATTGGGATCTCCGGCGGGTCGGGTCTCACCGTGTGGCCAGGATGATGATCTCGGTTCTGGTGGGAGTGACTCGCACCTCCACCCCGGAGTAGCCATCCTCTGCAAGCTCCCGAGTCAGAAACTCATTCAGCTCGGCTTTGAAGATGCCATCTGCAACAAACCTTCCTCTTCTTGGAGATCTGGGCCGTCATCTTGCTTCGAGCCGC
>TU16156
GGAAAACAGCTGATGGACATTTGACTTTAATAGTGCAGCTTTCATATTGTTCCAGGCATTTTGCAACAAgatcaatatattaatttgacaagtttgtaCACTACAAAGCTATCACCCACCGATAAACAGATCCCCAATTCTACAATCTGTAATtctctccattaaaaaaaaaaaagaaagccaggGAATgtcttttactgttttattgaaattttatACAGTTTATCCCCCGAGGACTTCCATCTTCAGGTGTCGATGGACCTTATGCGGTGGCGACTGGTCCGCCCTGTGGCATGACAGGGGCCTCTGGCTTGGCACCCTTCTGCTCAGACATGGGGGTGGTGGGGAGGACCTCATCCTTGGGCTCCACAATGCTGACGTGGTCAGGAAGAGGCTTCTTGGGGCCAATCTTGCCACTGGGATCCCAAGGCAGCATGATCTTGACCTTGATTCCCAGCACCCCTGCCTGAGCAAGACGTGGCGGACAGCAGTGTCAACGTAGTAGTTGACGGGGTCTCCACTGTGGATCATCAGGCCATCGACAAACTTCATGGACTTGGCTCTCTGGCCTCGGAGCTTGCCGGACACCACCACCTCGCAGCCCTTGGCCCCGCTCTCCATGATGAACCGCAGGACACCATAGCAGGCTCTGGCACAGCCAGGCCTCCCAGCAGCTTGTAACGCAGGGACTCCGCCTGGGCGATGGCACACAACCCTCTGGTGGCAACCTTCTCCGCATACAActaACGCTGTTCTCTGGGAAGCCAAACCTCTTCTGCACCACAGCAGTCAGTTCACGGATGCGGCGGCCTTTCTCACCAAGAACATTCTGAGTCGTGTGGCCAGGATGATGATCTCGGTTCTGGTGGGAGTGACTCGCACCTCCACCCCGGAGTAGCCATCCTCTGCAAGCTCCCGAGTCAGAAACTCATTCAGCTCGGCTTTGAAGATGCCATCTGCAACAACTTCCTCTTCTTGGAGATCTGGGCCGTCATCTTGCTTCGAGCCGC

Function

symbol description
rps3 Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in mitochondrial inner membrane; ribosome; and spindle. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in nucleus. Orthologous to human RPS3 (ribosomal protein S3).

NR:

description
PREDICTED: 40S ribosomal protein S3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16151 True 3572 lncRNA 0.30 2 17241944 17246330
TU16154 False 1933 lncRNA 0.34 5 17241944 17246330
TU16156 False 1010 lncRNA 0.53 7 17241944 17246330

Neighbor

gene id symbol gene type direction distance location
AMCG00016354 NA coding downstream 94959 17145993 ~ 17146985 (-)
AMCG00016352 NA coding downstream 118705 17122706 ~ 17123239 (-)
AMCG00016353 NA coding downstream 124209 17103974 ~ 17117735 (-)
AMCG00016351 LOC106613240,LOC107600776,LOC107577125 coding downstream 170497 17040305 ~ 17071447 (-)
AMCG00016350 NA coding downstream 218850 17009731 ~ 17023094 (-)
AMCG00016361 NA coding upstream 46758 17293088 ~ 17294875 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding upstream 134101 17380431 ~ 17413600 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding upstream 181174 17427504 ~ 17460486 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding upstream 220353 17466683 ~ 17472931 (-)
AMCG00016375 cul5,LOC107714978,LOC107554266 coding upstream 229088 17475418 ~ 17490419 (-)
G12978 NA non-coding downstream 317272 16918566 ~ 16924672 (-)
G12921 NA non-coding downstream 450275 16791423 ~ 16791669 (-)
G12915 NA non-coding downstream 492025 16749719 ~ 16749919 (-)
G12902 NA non-coding downstream 618038 16623683 ~ 16623906 (-)
G12897 NA non-coding downstream 633000 16608718 ~ 16608944 (-)
G13065 clns1a,LOC102781126 non-coding upstream 38073 17284403 ~ 17286829 (-)
G13091 NA non-coding upstream 128936 17375266 ~ 17377539 (-)
G13126 NA non-coding upstream 247525 17493855 ~ 17494346 (-)
G13129 NA non-coding upstream 249593 17495923 ~ 17496347 (-)
G13254 NA non-coding upstream 916457 18162787 ~ 18165770 (-)
AMCG00016345 NA other downstream 371942 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 380765 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 766774 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2449975 14785198 ~ 14791969 (-)
AMCG00016281 NA other downstream 2814654 14420356 ~ 14427290 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other upstream 17271 17263601 ~ 17266747 (-)
AMCG00016376 NA other upstream 291704 17538034 ~ 17541342 (-)
G13367 NA other upstream 1844909 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2882578 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3370179 20616509 ~ 20636960 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G103702 rps3,LOC107600794 non-coding NC_047600.1 CM018546.1 23270144 ~ 23275282 (-)