Gene
RNA
| Item | Value |
|---|---|
| gene id | G13091 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030122.1 |
| NCBI id | CM030122.1 |
| chromosome length | 54868152 |
| location | 17375266 ~ 17377539 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0042692 | muscle cell differentiation | biological_process |
| GO:0051146 | striated muscle cell differentiation | biological_process |
| GO:0010927 | cellular component assembly involved in morphogenesis | biological_process |
| GO:0055001 | muscle cell development | biological_process |
| GO:0055002 | striated muscle cell development | biological_process |
| GO:0055003 | cardiac myofibril assembly | biological_process |
| GO:0055004 | atrial cardiac myofibril assembly | biological_process |
| GO:0055006 | cardiac cell development | biological_process |
| GO:0055011 | atrial cardiac muscle cell differentiation | biological_process |
| GO:0055013 | cardiac muscle cell development | biological_process |
| GO:0055014 | atrial cardiac muscle cell development | biological_process |
| GO:0031032 | actomyosin structure organization | biological_process |
| GO:0097435 | supramolecular fiber organization | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0032989 | cellular component morphogenesis | biological_process |
| GO:0070925 | organelle assembly | biological_process |
| GO:0030029 | actin filament-based process | biological_process |
| GO:0030036 | actin cytoskeleton organization | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU16213 | True | 1853 | lncRNA | 0.40 | 2 | 17375266 | 17377539 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00016361 | NA | coding | downstream | 80391 | 17293088 ~ 17294875 (-) |
| AMCG00016354 | NA | coding | downstream | 228281 | 17145993 ~ 17146985 (-) |
| AMCG00016352 | NA | coding | downstream | 252027 | 17122706 ~ 17123239 (-) |
| AMCG00016353 | NA | coding | downstream | 257531 | 17103974 ~ 17117735 (-) |
| AMCG00016351 | LOC106613240,LOC107600776,LOC107577125 | coding | downstream | 303819 | 17040305 ~ 17071447 (-) |
| AMCG00016368 | myo7aa,myo7a,LOC107660700,LOC106581013 | coding | upstream | 2892 | 17380431 ~ 17413600 (-) |
| AMCG00016367 | capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 | coding | upstream | 49965 | 17427504 ~ 17460486 (-) |
| AMCG00016369 | dcun1d5,LOC106612886,LOC107600360,LOC107712802 | coding | upstream | 89144 | 17466683 ~ 17472931 (-) |
| AMCG00016375 | cul5,LOC107714978,LOC107554266 | coding | upstream | 97879 | 17475418 ~ 17490419 (-) |
| AMCG00016374 | NA | coding | upstream | 126341 | 17503880 ~ 17506443 (-) |
| G13065 | clns1a,LOC102781126 | non-coding | downstream | 88437 | 17284403 ~ 17286829 (-) |
| G13045 | rps3 | non-coding | downstream | 128936 | 17241944 ~ 17246330 (-) |
| G12978 | NA | non-coding | downstream | 450594 | 16918566 ~ 16924672 (-) |
| G12921 | NA | non-coding | downstream | 583597 | 16791423 ~ 16791669 (-) |
| G12915 | NA | non-coding | downstream | 625347 | 16749719 ~ 16749919 (-) |
| G13126 | NA | non-coding | upstream | 116316 | 17493855 ~ 17494346 (-) |
| G13129 | NA | non-coding | upstream | 118384 | 17495923 ~ 17496347 (-) |
| G13254 | NA | non-coding | upstream | 785248 | 18162787 ~ 18165770 (-) |
| G13334 | NA | non-coding | upstream | 1448655 | 18826194 ~ 18901976 (-) |
| G13339 | NA | non-coding | upstream | 1680866 | 19058405 ~ 19058673 (-) |
| AMCG00016360 | aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 | other | downstream | 108519 | 17263601 ~ 17266747 (-) |
| AMCG00016345 | NA | other | downstream | 505264 | 16866318 ~ 16870002 (-) |
| G12945 | ucp2,ucp2b,LOC106567822 | other | downstream | 514087 | 16858541 ~ 16861179 (-) |
| AMCG00016327 | NA | other | downstream | 900096 | 16470611 ~ 16475170 (-) |
| AMCG00016293 | NA | other | downstream | 2583297 | 14785198 ~ 14791969 (-) |
| AMCG00016376 | NA | other | upstream | 160495 | 17538034 ~ 17541342 (-) |
| G13367 | NA | other | upstream | 1713700 | 19091239 ~ 19105381 (-) |
| AMCG00016453 | NA | other | upstream | 2751369 | 20128908 ~ 20135547 (-) |
| AMCG00016479 | NA | other | upstream | 3238970 | 20616509 ~ 20636960 (-) |
| AMCG00016480 | NA | other | upstream | 3288603 | 20666142 ~ 20683024 (-) |
