G13129


Basic Information

Item Value
gene id G13129
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 17495923 ~ 17496347 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16264
GTTTAAGcattatatttatacagctctggaaaatattaagagaccactgcacatttttcttaaatcaccatctctacatgtatggcagccattccattccagtgtctgttgaattccaacacaagCACACCTCGTActactgaatgagctactgattaggtgatcacctgaaccaaatcttatttaacgtgGAAAAGTAtcaaaaccactgctgtggtcatcactatcctcttgcaataggaccagctggatggcaaaaacagtgctagtagtacctcaaaagtaattggaataaaaaataactattgaccatgccaaaacagttgaaaaggaaagttgtgagtgaggaaaagaagggttcaattctggctttactggcagagggatacagtgagcgttgggttgcttccatccttaaaatttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16264 True 425 lncRNA 0.41 1 17495923 17496347

Neighbor

gene id symbol gene type direction distance location
AMCG00016375 cul5,LOC107714978,LOC107554266 coding downstream 5504 17475418 ~ 17490419 (-)
AMCG00016369 dcun1d5,LOC106612886,LOC107600360,LOC107712802 coding downstream 22992 17466683 ~ 17472931 (-)
AMCG00016367 capn5b,LOC108440168,LOC107706463,LOC107548164,LOC101464883 coding downstream 35437 17427504 ~ 17460486 (-)
AMCG00016368 myo7aa,myo7a,LOC107660700,LOC106581013 coding downstream 82323 17380431 ~ 17413600 (-)
AMCG00016361 NA coding downstream 201048 17293088 ~ 17294875 (-)
AMCG00016374 NA coding upstream 7533 17503880 ~ 17506443 (-)
AMCG00016381 NA coding upstream 181783 17678130 ~ 17686737 (-)
AMCG00016384 LOC107548160,LOC108279362,LOC108440167,LOC103155416 coding upstream 200582 17696929 ~ 17704385 (-)
AMCG00016385 gria4 coding upstream 219421 17715768 ~ 17716983 (-)
AMCG00016383 gria4,gria4a,gria4b,LOC107756206 coding upstream 244285 17740632 ~ 17748750 (-)
G13126 NA non-coding downstream 1577 17493855 ~ 17494346 (-)
G13091 NA non-coding downstream 118384 17375266 ~ 17377539 (-)
G13065 clns1a,LOC102781126 non-coding downstream 209094 17284403 ~ 17286829 (-)
G13045 rps3 non-coding downstream 249593 17241944 ~ 17246330 (-)
G12978 NA non-coding downstream 571251 16918566 ~ 16924672 (-)
G13254 NA non-coding upstream 666440 18162787 ~ 18165770 (-)
G13334 NA non-coding upstream 1329847 18826194 ~ 18901976 (-)
G13339 NA non-coding upstream 1562058 19058405 ~ 19058673 (-)
G13341 NA non-coding upstream 1581021 19077368 ~ 19077823 (-)
G13366 NA non-coding upstream 1591877 19088224 ~ 19088632 (-)
AMCG00016360 aamdc,LOC107658908,LOC107660681,LOC107600345,LOC107600309 other downstream 229176 17263601 ~ 17266747 (-)
AMCG00016345 NA other downstream 625921 16866318 ~ 16870002 (-)
G12945 ucp2,ucp2b,LOC106567822 other downstream 634744 16858541 ~ 16861179 (-)
AMCG00016327 NA other downstream 1020753 16470611 ~ 16475170 (-)
AMCG00016293 NA other downstream 2703954 14785198 ~ 14791969 (-)
AMCG00016376 NA other upstream 41687 17538034 ~ 17541342 (-)
G13367 NA other upstream 1594892 19091239 ~ 19105381 (-)
AMCG00016453 NA other upstream 2632561 20128908 ~ 20135547 (-)
AMCG00016479 NA other upstream 3120162 20616509 ~ 20636960 (-)
AMCG00016480 NA other upstream 3169795 20666142 ~ 20683024 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G258387 NA non-coding NW_019171639.1 APWO02001237.1 279140 ~ 280302 (-)