G13273 (grm5,LOC102779205,LOC106613232,LOC106581415)


Basic Information

Item Value
gene id G13273
gene name grm5,LOC102779205,LOC106613232,LOC106581415
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 18288040 ~ 18288261 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16448
ctccattctcatcaaacAAGATGCCTTCCCCAGAGACCCCTGTGAAGTTTGTCTTCATTAGGAAGTCCAGCAGTTTTCTGCCATCGATGGGCTTCATAGAGTCACAGAGACCAGCAAATCCCGGGCACAAGGACTGCTGCATGTTGTGTAGTCCGTACGCCATGGAGTATATGGCATTGATGACAAAGCCCATTTTGGTGTCTTGGACATAGTGCTGCTTTA

Function

symbol description
grm5 Enables G protein-coupled receptor activity; glutamate receptor activity; and identical protein binding activity. Involved in several processes, including calcium-mediated signaling using intracellular calcium source; cellular response to amyloid-beta; and regulation of cellular protein metabolic process. Is integral component of plasma membrane.

NR:

description
PREDICTED: metabotropic glutamate receptor 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16448 True 222 lncRNA 0.58 1 18288040 18288261

Neighbor

gene id symbol gene type direction distance location
AMCG00016393 tmem135,LOC107718730,LOC107701128,LOC107693910 coding upstream 122911 18157707 ~ 18165129 (+)
AMCG00016394 tmem135,LOC107701128 coding upstream 187237 18098011 ~ 18100803 (+)
AMCG00016388 NA coding upstream 202937 18081922 ~ 18085103 (+)
AMCG00016387 pdgfd coding upstream 400304 17875444 ~ 17887736 (+)
AMCG00016386 NA coding upstream 596780 17686856 ~ 17691260 (+)
AMCG00016397 NA coding downstream 76477 18364738 ~ 18370387 (+)
AMCG00016411 fat3 coding downstream 340167 18628428 ~ 18635806 (+)
AMCG00016412 NA coding downstream 374741 18663002 ~ 18663364 (+)
AMCG00016405 NA coding downstream 415606 18703867 ~ 18762647 (+)
AMCG00016408 mtnr1b,LOC103355263 coding downstream 503662 18791923 ~ 19090628 (+)
G13270 NA non-coding upstream 13601 18270033 ~ 18274439 (+)
G13267 NA non-coding upstream 22634 18265202 ~ 18265406 (+)
G13266 NA non-coding upstream 25697 18259268 ~ 18262343 (+)
G13174 NA non-coding upstream 607131 17658757 ~ 17680909 (+)
G13021 NA non-coding upstream 1141042 17143610 ~ 17146998 (+)
G13274 NA non-coding downstream 22267 18310528 ~ 18315356 (+)
G13323 NA non-coding downstream 495187 18783448 ~ 18826531 (+)
G13342 NA non-coding downstream 802980 19091241 ~ 19105528 (+)
G13364 NA non-coding downstream 873321 19161582 ~ 19161812 (+)
G13411 NA non-coding downstream 967464 19255725 ~ 19255932 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 688459 17562418 ~ 17599581 (+)
G13012 NA other upstream 1166108 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 1802037 16484355 ~ 16486003 (+)
AMCG00016288 NA other upstream 3504505 14745316 ~ 14783535 (+)
G12587 NA other upstream 3849434 14437771 ~ 14438606 (+)
AMCG00016407 NA other downstream 130756 18419017 ~ 18473689 (+)
AMCG00016429 lamtor1,LOC106581407 other downstream 1586795 19875056 ~ 19879725 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 3493845 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 5578006 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 5649790 23938051 ~ 23945024 (+)

Expression


Co-expression Network