G13685


Basic Information

Item Value
gene id G13685
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 20393511 ~ 20403506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU16951
TCTATAAACTAccgacaacatttctcccaaattccaaataaagatataaatgGAATGCAGTGGCtaccatacatgtagagatgctgatttaagaaaaatttgcagtggtctcttaagttttcccagagctgtatatatgtatgctgATGCGTTTTGTTCGTGGATGAgtgaaaaatgtttgcaaaaccCTGCTCTAGACAACTGAGTGCATTAACCTTTTCTGTCTGTGTACACAAACCACTTTGTGCGTTTCTGTGACACAGGACTGATCGCTTGCTCTCGGCTATCTGCAGTTTTGGAAATCATGAGGAAAAAAGGAACAGATTCTTTGTATAGCAAAAAGGAAGaagatatttaaagaaaagaaaaatcttccTAAACTACTCTAAAGGTACTGCACATCATGTTGCATGGTACATGACAAGTACAGTAATCAGTAATAAGGTCAGAATGACTCGGTTGTGTCTGATCTGCCACCCTCCCCCCTCTATAAAAGCCAACTGTAACAATGACACGGGAAATCCATCACAGCACTTCTCATTGCCAGAATGTGAGGAAGGAAGTGGTATTCATGAACCGAGTCTGTAATCCCAGAATGAACTAGTTCCTTGAGAGTCACGAGACTGCCGCTGAATTTCTGTTCAAACAGGAACCCGAGAACCTGCGAGTGAGCAATGCCCCGCTGTGCTCTGATGCTCACGGCCAGAACGAACCAGAAACGCTTGGTTCTCGCCCGGCACATTCCTGGCATGACTCAGTTCCTCACACGATGTTGACATGACCATAGGAGCAAGGATATGTCATTCTTTGCGATTTAATCAAACCCACCAGCTCAATTCCTAcatgtgtgtatcagtatgaTTAAGAGCCCTGACCTGGGAGCCTAGAGCAGAGGGTTCACTCTCTCAGGCCTTTCTAACAATTTTCTAAAAccctgcaaaagaaaaaatccaCGCTGGAGGTCTACCAAATACAGGATTGGTTCAATAACCGTTTCATCACGTTATATTAAACCCTGGGCTAGGTAACATGAGTCAAAGGTCCCAACAGCATTAATTGTaatagcttttatttttgtattagtataCATCaaatcagttgtttttttaaagcaggcaTACAGTACTATCACAACTTCTTAATTATGaaagttaaattacattttaacaaaacaaaacaaaaaacaaaaaaaccgaAAGCCACAGGTGTGTCAGACTGCTCCCGTCAGGCACTCTACTTGGCGGACATCTTGAGCAGGTACTCCTTGTCGATCTCGAAGAGCCGCCAGCCCTCCTCCAGAGAGAGGTCGGAGGCGCCGCGCCGCTTGTAGAACTCGATGGACGGCTTGTTCCACTCGGCCACGATGAAATGCATGCTGCTGCACCGCGTCTTCACAGCCGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU16951 True 1405 lncRNA 0.54 2 20393511 20403506

Neighbor

gene id symbol gene type direction distance location
AMCG00016469 NA coding upstream 1022 20380613 ~ 20392489 (+)
AMCG00016456 klhl15,LOC107727232 coding upstream 40005 20350648 ~ 20353506 (+)
AMCG00016458 NA coding upstream 61736 20328705 ~ 20331775 (+)
AMCG00016457 NA coding upstream 76757 20308979 ~ 20316754 (+)
AMCG00016448 abcg1,LOC108426925,LOC107684024,LOC107561305,LOC107677096,LOC107755138,LOC106612441 coding upstream 267227 20104916 ~ 20126284 (+)
AMCG00016467 NA coding downstream 4797 20408303 ~ 20419818 (+)
AMCG00016466 pdha1a,LOC107599948,LOC107726384,LOC107672749,LOC107592287 coding downstream 22987 20426493 ~ 20434211 (+)
AMCG00016465 NA coding downstream 32261 20435767 ~ 20440084 (+)
AMCG00016468 NA coding downstream 44844 20448350 ~ 20466290 (+)
AMCG00016475 casr coding downstream 74549 20478055 ~ 20482996 (+)
G13682 eif2s3,LOC107727229,LOC107686712,LOC107741782 non-coding upstream 48439 20342074 ~ 20345072 (+)
G13681 NA non-coding upstream 74172 20319017 ~ 20319339 (+)
G13662 spcs2,LOC107677086 non-coding upstream 103677 20287075 ~ 20289834 (+)
G13659 NA non-coding upstream 137491 20219443 ~ 20256020 (+)
G13599 NA non-coding upstream 360595 20031493 ~ 20032916 (+)
G13700 prdx4,LOC107734341,LOC107665442,LOC107654298,LOC105904605 non-coding downstream 20631 20424137 ~ 20425842 (+)
G13791 NA non-coding downstream 211239 20614745 ~ 20617697 (+)
G13798 NA non-coding downstream 243329 20646835 ~ 20652272 (+)
G13799 NA non-coding downstream 250164 20653670 ~ 20655615 (+)
G13873 NA non-coding downstream 1518647 21922153 ~ 21922461 (+)
AMCG00016429 lamtor1,LOC106581407 other upstream 513786 19875056 ~ 19879725 (+)
AMCG00016407 NA other upstream 1919822 18419017 ~ 18473689 (+)
AMCG00016379 cwf19l2,LOC107560834,LOC107670086,LOC107728743,LOC107566889,LOC107669872 other upstream 2793930 17562418 ~ 17599581 (+)
G13012 NA other upstream 3271579 17116793 ~ 17121932 (+)
AMCG00016329 NA other upstream 3907508 16484355 ~ 16486003 (+)
AMCG00016490 atg16l2,LOC107677090,LOC107746253,LOC106613341,LOC107730987 other downstream 1378600 21782106 ~ 21832148 (+)
AMCG00016502 NA other downstream 3462761 23866267 ~ 23882946 (+)
AMCG00016506 NA other downstream 3534545 23938051 ~ 23945024 (+)
G14057 NA other downstream 3676511 24080017 ~ 24110182 (+)
AMCG00016537 NA other downstream 4076200 24479706 ~ 24561807 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G45368 NA non-coding NC_053115.1 CM020912.1 42412216 ~ 42412661 (-)
tiger barb (Puntius tetrazona) G41023 NA non-coding NC_056703.1 CM032072.1 31655583 ~ 31701818 (-)